Glyma08g44960 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g44960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44420793
stop:	44437676
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13330	AT	Annotation by Michelle Graham. TAIR10: proteasome activating protein 200 \| chr3:4319804-4330061 REVERSE LENGTH=1816	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG1851	KOG	Uncharacterized conserved protein	JGI		ISS
PF11919	PFAM	Domain of unknown function (DUF3437)	JGI		ISS
UniRef100_F4JC97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome activator subunit 4 n=2 Tax=Arabidopsis thaliana RepID=F4JC97_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338F98	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338F98 related cluster n=1 Tax=unknown RepID=UPI0002338F98	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g44960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44960

Paralog	Evidence	Comments
Glyma18g07950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g336400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g44960

Limit To All Plant Sequences

>Glyma08g44960.1   sequence type=CDS   gene model=Glyma08g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCTCTACAATGCATGGCTTCCGCCGCCGGTGGCGTCTCAGACCTCCGGCGAGCGCGACTCCTTCGCCCGCCTCATCGCCGCCGTCAACTCCTCCTTCCGCTCCGACGATCCCGATTCCGTCTACTCTACTCTCAAATTCATCTCCGTCCTCGACCTTTTCATAAAGGCAAAAAGTGATTTAGCTTTGGAGGATGTTCGCAACCTTATCCATAAGGGCCTTGAGATATTTCATGTGTCCCGTAATAAGCTTTATGCTCAGGTTAGATGGGGAAATTTCTTAGTCAGACTACTCAACAAATATAGGAAAAAGATTTCACTGACTACTGAATGGAGGCCACTGTATGATACACTGGTTAGCACACATTTTACTAGAAGTACAGGACCAGAAGGTTGGAGAATAAGACAGCGACATTTTGAAACTATAACTTCCCTTGTTCAGTCCTGCCGGAGATTCTTCCCATCAGGTTCTGCCTTTGAGATATGGTCTGAGTTTAAATTTTTATTGCAAAACCCATGGCATAATTCATCCTTTGAAGGTTCTGGCTTTGCAAGACTGTTTCTCCCCACAAATCTGGATAATCAGGCCTTTTTTACACAGGATTGGATAACAGAGTGTATAGAGTTGTGGGAATCTATACCAAATTGCCAATTCTGGAACAATCAATGGGCAGATGTTATTGCTCGTGTTGTAAAAAATTACCACAATGTTGACTGGGAGTGCTTCTTGCCTTTGCTTTTTGCTAGATACTTGAATATGTTTGAGGTACCTGTTGCAAATGGAAGTGGATCATATCCCTTTTCACTGGATGTCCCAAGAAATACTAGGTTCTTGTTCTCCAATAAAACTTCTACTCCTGCAAAGGCTATTGCCAAATCAATAGTATATTTACTAAAACGTGGTAGTTCATCAGAAAAGCACTTTGAGAAATTGATCAACATTTTGGAACAATATTATCATCCCTCAAATGGGGGTCGGTGGACCTATGCATTGGAGCGGTTTTTGTTTCATTTGGTGTTTCAATTTCAAAAGCGTCTACAGAATGAACAGTTGGGCATAAATAATAGCAGACCCACCGAACAGCATCTTGGGGAATTAGAGAGGGTTTTCTTTGTTAATTCAGTGCTAAAGTTAATTGACCGTGGTCAATACAGCAAGAATGAACATCTCTCTGAGACAGTTGCTGCAGCAACTTCTATACTGTCCTATGTAGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCGAATGGCCCTTGAGACGATGACTGCCACTCACCAGTTGAAAATTGCCGTTATGTCAGTGGCATTTGTCGGGCGTTCACTATTTTATACATCTGTATCAGCTTCCTCCATGAAACCAATTGATCTTGGTGGTGGTGATGAAACATTCATTGATCTTGTGGGGGTTTCATTATCCAATGCATTACTTGGCATGGATGCTAATGACCCTCCAAAAACCTTGGCTACCATGCAATTAATTGGTTCCATATTTTCAAATTTGGCTTTATTGGATGATAAAATTGATGACCTATCATTTATGCCGATGATCCGCTTTTCAGAGTGGCTGGATGAGTTCTTATGCCGCCTGTTCTCCCTACTTCTACACTTGGAACCCGGCAGTGTTATAAATGAAGGTCTGCAATCATCAGCAGCAACAGGAACTTTCCTGGTTGATGATGGTCCATACTACTTCTGTGTGCTTGAAATTCTGTTTGGGAGGCTTTCAAAATCACTGTATAATCAGGCTTTGAAGAAAATTTCCAAGTTTGTGAGGACAAATATTCTTCCCGGTGCTGTTGCAGAGGTTGGACTGCTTTGTTGTGCGTGTGTTCACTCAAACCCGGAAGAAGCAGTTAGTCAACTTGTTGAGCCAATATTACTGTCTGTGATATCTTCTTTGAAAGGAACACCACGCACTGGATTTGGAGGAGGAGGAACTTTTGATGCTTCTGCTTCATCAAAGGTTAGATCCAGCATTTCACCAGCTCTTGAGGCTTCAATTGACTATCAACTTAAGATATTGTCTGTTGGCATCACATATGGAGGTCCAGCGATCCTCCGCTACAAGGATCAATTCAAAGAAGCTATCTTCTTGGCTTTTGACTCACCATCTTGGAAGGTTAATGGGGCTGCTGATCATCTTCTTCGGTCCCTTCTTGGAAGTCAGATTCATTATTATCCAATAGATCAGTATAAGTGTGTTCTTAGTCACCCTGATGCTGTTGCTCTAGAAGAATGGATTAGCACAAAAGGTTTTTCCACTGATGAAAAGTTGATCCCAAAGTGGCATATTCCTTGTGATGAAGAAGTTCATTTTGCAAATGAGCTTTTAGACATTCACTTCAAGTCAGCTTTGGATGATCTTTTGAAAATATGCCAGACTAAAATCCATGCCGACCAAGGAGACGAGAAAGAGCACTTGAAGGTGACTCTTTTGCGTATTGAATCATCGTTGCAAGGACTTTTTTCTTGTTTGCCCGATTTTGTCCCAGACTCTAGGAATGGAATGGTTGAAGATTCAAACCATATGTTTTTAATTGCCGGGGCCACAGGTTGTACTGTTGGTAGTACTGCTCTGAGAGAAAAAGCTACTGAGGTTGTACATGCAGCCTGCAAATATGTCCTGGAGAAAAAATCAGATGACAGCATCCTGTTGATACTGATTATTCGCATCATTGATGCTTTAGGAAACTATGGAAGTTTGGAGTATGATGAGTGGTCTAGTCACAGGCAGGCTTGGAAATTAGAATCTGCTGCCATAATAGAACCCCCCATTAATTTCATTGTGTCATCTCATTCTAAAGCAAAGAAAAGACCTAGGTGGGCTCTTATTGACAAGGCATTTATGCACAATACATGGAGGTCTTCACAAGCATCCTATCATCTTTACCGTACAAGTGGGAATTTCTGCCCATCTGATCATGTGACTATGTTGATGGATGATTTGTTGAGTCTCTCGTTGCATAGCTATGAAACTGTCCGCCTGCTTGCTGGGAAATCTCTAGTGAAGCTGATCAAGAGATGGCCATCTATGATTTCAAAATGTGTTATCACTCTTACCCATAACTTGCAGGATACCAATGCCAAGGAATATGCAGTGTTGGGGTCCTGTTCAGTCCTTGCCTCACAAACAGTACTCAAGCATTTGACAACGGATCCAAAGTCATTCTCTTCATTTATCTTGGCAATTCTTTCAAGTTCGCATCATGAATCCTTGAAAGCTCAGAAAGCAATTAATGAGCTTTTTGTGAAGTACAACATTCAATTTTCTGGAGTATCTAGAAGCTTTTTCAGGATCTCAGACAAAGAAAATCATACTGGTGGGCTGGGGTTTTCAGATTTGGTTTCTCAGATTGGCTCCATGAGTTTTGATTCTACTGGCTTGCATTGGAGGTATAACTTGATGGCTAATAGAGTGCTGCTCCTGCTGGCTTTGGCATCTAGGAACCATCCAAATTCATCTTCTAAAATTCTGAGTGAAACTGCTGGACACTTCCTGAAGAATTTGAAAAGTCAGCTTCCTCAGACAAGGATACTTGCAATTTCAGCTTTGAATACACTATTAAAGGAATCTCCATATAAACTGTCTCATGGTGAGAAATCTGCCGTACTTGAGGATTTGCAAGACCATGTCAAATCATCACTTGAAGGAACTTTAACGCAAACTTTTCAGGAAGAGGGTTTCTTCAATGAGACACTGACTAGTCTTTCTCATGTTCATATAATAACTGATACTGAAACTGCTTCAAGAGGAGGTCAGGGAGATTCAAGTTTCCAAAGCTTAGCAGACAAATCCATAACTCGTTTTTACTTTGAATTTTCGGCTTCATGGCCACGTACGCCAAGTTGGATCTCCTTTTTAGGAAGTGATGATACCTTTTATTCAAGTTTTGCTCGTATTTTTAAACGGCTAGTACAAGAATGTGGCATGCCTGTCGTATTGGCTCTTAAAGGTGCAGTAGATGAGTTTATAATTGCTAAGGAGAGGTCTAAACAATGTGTAGCTGCTGAAGCGTTGGCGGGTGTGCTACATTCTGATATTGATGGTCTATCAGGAACATGGGAAAGTTGGCTGATGCCTCAGTTGAAGAACATCATTTTAGCCCAATCTGTTGAATCAGTTTCAGAGTGGGCATCTTGCATACGATATGCAGTTACTGGTAAAGGAAAGTATGGAACAAGAGTTCCTCTTTTAAGACAGAAAATTCTGGATTCTTTGATGACACCTTTACCTCCAACAGTAGCTACTACAGTAACAGCCAAACGATATACTTTTCTGGCTGCTGCACTTATAGAAATATCCCCACAGAAAATGCCAGTAGCTGAAATCCAGCTCCACAATACACTTCTGAAGGAAGTTCTTGGTAATATGTGCCACTCATCAGCCCAAGTGAGGGAGGCTCTAGGGGTTACCCTTTCTATATTGTGCTCTAACATTAGGCTCTATCATTCAAGCCGTCATGATAATGCACAGGATGAGAGAAATGACAATGTTGATAGTTTGATGAAAGATGAAAGCTGGGTTCAGTTTCTTACAGAGCGAGCAGCTGAAGCAGTTGTCAACATTCAGATTGCTACCCAATCAGATAAAGTAGTGAATCCTGTAGATTCAAGTTCTCAAAATGGGCATCTAGATGGTGATTCACAAGATGACATTAAATGGATGGAAACGCTACTCTACTTCATCATCTCATCATTGAAGTCTGGGAGATCCTCATATCTGCTCGACGTGCTTGTGGGACTTCTATATCCTGTGATTTGCTTGCAGGAAACATCAAATAAGGATTTGTCAACATTAGCCAAGGTAGCATTTGAATTGCTTAAATGGATGATTGTTTGGGAACCTCACCTTCAGAAGGCTGTATCTGTGATTCTTACTGCTGCCAATGATTCCAACTGGCGAACTAGATCTGCTACATTGACATATCTGCGCACATTCATGTACAGGCACACTTATATTCTCTCAAGTTCAAAGAAGCAAGAAATTTGGAGAACTGTTGAGAAGTTACTAGTAGACAATCAAATTGAGGTAAGAGAACATGCTGCAGCAGTTTTAGCAGGCCTAATGAAGGGCGGAGATGAAGATCTTGCTAGAGATTTCCATGATAGAGCTTATAAGGAGGCAAATATTGTACAGAAGAGAAGAAAGTCGAGAAATGCAAGTTCTGGATTATCAATAGCATCTGTTCATGGTGCTGTACTAGCTTTGGTAGCTTCTGTATTATCAGCCCCATATGACATGCCCAGTTGGTTGCCTGATCATGTTACACTACTTGCTCGCTTCAGTGGGGAGCCATCACCCGTGAAATCTACAGTTACTAAAGCAGTTGCAGAGTTCCGGCGGACCCATGCTGATACATGGAATGTTCAGAAAGAATTATTTACTGAAGAGCAACTTGAGATTCTGGCGGATACATCCTCCTCGTCATCATATTTTGCTTGA

Predicted protein sequences of Glyma08g44960

Limit To All Plant Sequences

>Glyma08g44960.1   sequence type=predicted peptide   gene model=Glyma08g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLYNAWLPPPVASQTSGERDSFARLIAAVNSSFRSDDPDSVYSTLKFISVLDLFIKAKSDLALEDVRNLIHKGLEIFHVSRNKLYAQVRWGNFLVRLLNKYRKKISLTTEWRPLYDTLVSTHFTRSTGPEGWRIRQRHFETITSLVQSCRRFFPSGSAFEIWSEFKFLLQNPWHNSSFEGSGFARLFLPTNLDNQAFFTQDWITECIELWESIPNCQFWNNQWADVIARVVKNYHNVDWECFLPLLFARYLNMFEVPVANGSGSYPFSLDVPRNTRFLFSNKTSTPAKAIAKSIVYLLKRGSSSEKHFEKLINILEQYYHPSNGGRWTYALERFLFHLVFQFQKRLQNEQLGINNSRPTEQHLGELERVFFVNSVLKLIDRGQYSKNEHLSETVAAATSILSYVEPSLVLPFVASRFRMALETMTATHQLKIAVMSVAFVGRSLFYTSVSASSMKPIDLGGGDETFIDLVGVSLSNALLGMDANDPPKTLATMQLIGSIFSNLALLDDKIDDLSFMPMIRFSEWLDEFLCRLFSLLLHLEPGSVINEGLQSSAATGTFLVDDGPYYFCVLEILFGRLSKSLYNQALKKISKFVRTNILPGAVAEVGLLCCACVHSNPEEAVSQLVEPILLSVISSLKGTPRTGFGGGGTFDASASSKVRSSISPALEASIDYQLKILSVGITYGGPAILRYKDQFKEAIFLAFDSPSWKVNGAADHLLRSLLGSQIHYYPIDQYKCVLSHPDAVALEEWISTKGFSTDEKLIPKWHIPCDEEVHFANELLDIHFKSALDDLLKICQTKIHADQGDEKEHLKVTLLRIESSLQGLFSCLPDFVPDSRNGMVEDSNHMFLIAGATGCTVGSTALREKATEVVHAACKYVLEKKSDDSILLILIIRIIDALGNYGSLEYDEWSSHRQAWKLESAAIIEPPINFIVSSHSKAKKRPRWALIDKAFMHNTWRSSQASYHLYRTSGNFCPSDHVTMLMDDLLSLSLHSYETVRLLAGKSLVKLIKRWPSMISKCVITLTHNLQDTNAKEYAVLGSCSVLASQTVLKHLTTDPKSFSSFILAILSSSHHESLKAQKAINELFVKYNIQFSGVSRSFFRISDKENHTGGLGFSDLVSQIGSMSFDSTGLHWRYNLMANRVLLLLALASRNHPNSSSKILSETAGHFLKNLKSQLPQTRILAISALNTLLKESPYKLSHGEKSAVLEDLQDHVKSSLEGTLTQTFQEEGFFNETLTSLSHVHIITDTETASRGGQGDSSFQSLADKSITRFYFEFSASWPRTPSWISFLGSDDTFYSSFARIFKRLVQECGMPVVLALKGAVDEFIIAKERSKQCVAAEALAGVLHSDIDGLSGTWESWLMPQLKNIILAQSVESVSEWASCIRYAVTGKGKYGTRVPLLRQKILDSLMTPLPPTVATTVTAKRYTFLAAALIEISPQKMPVAEIQLHNTLLKEVLGNMCHSSAQVREALGVTLSILCSNIRLYHSSRHDNAQDERNDNVDSLMKDESWVQFLTERAAEAVVNIQIATQSDKVVNPVDSSSQNGHLDGDSQDDIKWMETLLYFIISSLKSGRSSYLLDVLVGLLYPVICLQETSNKDLSTLAKVAFELLKWMIVWEPHLQKAVSVILTAANDSNWRTRSATLTYLRTFMYRHTYILSSSKKQEIWRTVEKLLVDNQIEVREHAAAVLAGLMKGGDEDLARDFHDRAYKEANIVQKRRKSRNASSGLSIASVHGAVLALVASVLSAPYDMPSWLPDHVTLLARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEEQLEILADTSSSSSYFA*

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