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Report for Sequence Feature Glyma08g44841

Feature Type:gene_model
Chromosome:Gm08
Start:44338043
stop:44347997
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g44841
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13300AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309 SoyBaseE_val: 2.00E-137ISS
GO:0006402GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA catabolic process SoyBaseN/AISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010071GO-bp Annotation by Michelle Graham. GO Biological Process: root meristem specification SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0031087GO-bp Annotation by Michelle Graham. GO Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA SoyBaseN/AISS
GO:0071365GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to auxin stimulus SoyBaseN/AISS
GO:0000932GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PTHR15598Panther AUTOANTIGEN RCD8 JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7IY76UniRef Annotation by Michelle Graham. Most informative UniRef hit: Enhancer of mRNA-decapping protein n=2 Tax=Medicago truncatula RepID=G7IY76_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023390CCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023390CC related cluster n=1 Tax=unknown RepID=UPI00023390CC SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g44841
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g44841 not represented in the dataset
Glyma08g44841 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g44841 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g337400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g44841
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g44841
>Glyma08g44841.1   sequence type=CDS   gene model=Glyma08g44841   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAACATGTTTTAAGGATTGATACCACAAAAGTTGGAAATGGTGAAGCCTTTGTGGTAGATGATCCTCTGAGATGTCCTGTGGATAAGCTCATTGATGGGGTTCAGCTGGTAGGCACACATGACGGGGAGGTGACTGATTTGTCGATGTGCCAATGGATGACCAATCAATTGGTATCTGCGTCACAAGATGGCACGATAAAGATCTGGGAAGATCGCAAGACCCAACCACTTGCGATTTTGAGACCACATGATGGGAATCCGGTTTTTTCTGCTACATTTTTTACTGCTCCTCACCAGCCTGATCATATTGTCCTTATCACAGCGGGACCACAAAATCGGGAAGTAAAGCTTTGGGTCTCAGCAAGTGACAAAGGTTGGGTGCTCCCAAGTGACACTGAATCATGGAAATGCACTCAGACATTGGAGTTGAAGAGTTCAGCTCAACCTTCTATGGATGCATTCTTTAATCAAGTTGCAGCATTGTCTCATGCAGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCATTTAGAATATGGTTCTAATCCAGAATCAACACGCATGGATTATATAGCCGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGGACCAGTGATATATTGCCTCATGGTGAACATATTGTTCAGGTTTATTGTGTTCAAACACAGGCTATTCAGCAGTATGCTTTGGATCTGGCTCAGTGCTTGCCTCCGCCATATGAAAATGTGGGACTAGAGAATTCAGATTCCAGTGTTTCACGCGATCCTATTACTGTTGAAGGATTCCACTCTTTAGATTCTTCTGCAGGTAGAACAACTGAAATGTCTTTAGCCAGTTCTGCTCCCAAAACAATGTTACAAACAAGTAGTAATGAGGGTGGACTTGTGGCACGATACCCTTTAAGCTCTGGCCATGTTGAGGCACCTATTTCTAGAGGAATCAGCAGTTCAAATACTGAAGCTAAACCTGCTACGTTACGGTCGGTTTCCCTCTCACCCAGGCTTATTGCTGGCTCATCACTGGTCAGTTCAGGATTGACAATGGAAGCGATAGTTAAAAAATTTCAGTCAAAATTCAGGAAAGTTAGGGAAGCAATGAGTCGATGGGATAAGCTTCAATCTTGCTTAATTTCTCAGTTTAGGAATGCTTTCCATATTGTTGATAGGTTGCAGGTGCTTCAAAATTCCAACAATTATGGTGTTTTAAATTGTGCCAGTGGCATGAAAGATGCTCTTTTGGTAAAGCAGATTGAATCTTTGAGGAACATCTTGGTTTCCATGCGAAAGACTCTGGAAGAATTTCATTGTATTGTCTTATCTCTTGACAAAATTCACCATGATAGTAGACAACAAGTGAAAGGTGGTTCTTGTATTCTGAACATGAAACAATTGCAGCAACAAATTGGCATCAAACCTAGTCTTATCTATTGCTTGGATAGCCTGATGTTTATACATGAGATATACAACTCTGAGTATTTATTAAAGTCATCAGTGATCTCAGCACTATCAGAAATTGCCTTGAAGCCCAGTGACAGTGATCTTGGTGCACTTCAGCAACTCTTGGTTGATCAACCCAATCTCCAAACTGTGGAAGTTCAATTTGTATTTGATGTGATATTTGCCGAGGAACTGAGTTGA
Predicted protein sequences of Glyma08g44841
>Glyma08g44841.1   sequence type=predicted peptide   gene model=Glyma08g44841   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKHVLRIDTTKVGNGEAFVVDDPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNQLVSASQDGTIKIWEDRKTQPLAILRPHDGNPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASDKGWVLPSDTESWKCTQTLELKSSAQPSMDAFFNQVAALSHAAGLLLLANAQRNAIYAVHLEYGSNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPYENVGLENSDSSVSRDPITVEGFHSLDSSAGRTTEMSLASSAPKTMLQTSSNEGGLVARYPLSSGHVEAPISRGISSSNTEAKPATLRSVSLSPRLIAGSSLVSSGLTMEAIVKKFQSKFRKVREAMSRWDKLQSCLISQFRNAFHIVDRLQVLQNSNNYGVLNCASGMKDALLVKQIESLRNILVSMRKTLEEFHCIVLSLDKIHHDSRQQVKGGSCILNMKQLQQQIGIKPSLIYCLDSLMFIHEIYNSEYLLKSSVISALSEIALKPSDSDLGALQQLLVDQPNLQTVEVQFVFDVIFAEELS*






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