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Report for Sequence Feature Glyma08g44610

Feature Type:gene_model
Chromosome:Gm08
Start:44169523
stop:44175680
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26550AT Annotation by Michelle Graham. TAIR10: Got1/Sft2-like vescicle transport protein family | chr4:13402755-13404208 REVERSE LENGTH=225 SoyBaseE_val: 1.00E-116ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2887 KOG Membrane protein involved in ER to Golgi transport JGI ISS
PTHR23137Panther UNCHARACTERIZED JGI ISS
PF04178PFAM Got1/Sft2-like family JGI ISS
UniRef100_G7IXT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SFT2 n=1 Tax=Medicago truncatula RepID=G7IXT8_MEDTR SoyBaseE_val: 3.00E-137ISS
UniRef100_I1KYP1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYP1_SOYBN SoyBaseE_val: 8.00E-155ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g44610 not represented in the dataset

Glyma08g44610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g08200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g333100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g44610.4   sequence type=transcript   gene model=Glyma08g44610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAAAAATTAAAAAAAAAAGTATAGTTAGATTAATAAAAAAAAATGCAGAAAATTGTCATAGCAATCCACTAGTGATTCCATTTCATCAGACATAGCAGGAGCAGTACCCAACAGCTACCCAATCCATTGCTTAACAGTCACGCAAGCAGCAAGGATCGCAATTGCATTTTGTGGGAATCGGCGGCGAGAAAATGCAGGGTTGGTTCTCGGGGCAGAGTAGCGAGGAGGAGGCGAAGCCGGCGTCGTCGTTGCTCGCCGATTGGAACTCCTACGCATCCGCCCAAACCTCTGAAGATTCATCCACTTTCCCCTTCGATATCGAATCCGCCGTTAGGTCTGCCAACGACACCGTTTCCGGCACTTTCAGCGTGGTTTCTAAAGGTGTGAGAGATCTACCTGGCAACTTCCAGTCTGCCACTAGTAATGTGCCTTCTGGCAAAGCGCTTGTGTATTTTGGTTTGTTTCTGGCAAGTGGAGTCTTCTTTGTTTTCATAGCATTTACATTATTTCTGCCCGTCATGGTAGTTATGCCCCAAAAGTTTGCCCTATGCTTTACACTTGGGTGTGGATTTATTATTGGATCATTCTTTGCTCTCAAGGGTCCAAAGAGTCAGCTTGCTCACATGTTGTCAAAGGAGAGGCTCCCTTTCACATTGGCTTTTTTAGGCAGTATGATTGGTACCATATATGTATCAATGGTGCTTCACAGCTACATTCTCTCTGTGGTATTCTCTGTAGTGCAGGTTCTCTCACTTGGCTACTATTCTATATCGTACTTTCCTGGTGGATCTGCTGGAATGAAATTTCTGACTTCTGCTTTTACCTCTTCAATAATGAAATGTTTTGGGCGGTGACCTATTTTTTGTTGATAGTTGAGTTGAGTTCAGACCTGTGTCCATATAGTAGTTGACTTGTAAATTTGTCTCCTAAGATCTATCAGCTGAAGCTTCAAAGTGACCTAAGAATATTACTGCGTTGAAGCATCTCTAACAGTTTCTTAGGGTTCACCGTTTGTTGTTACTTGCCACATCTAAATGAAAAAAATTGTTTTGCCTCGTGTTTGTAAAAGCAAATTAACATTATCTGATTGAAGTTGATTGTTGCTACCTTTGTGTTGCAATTTGAAATATATTTTTGTTTGAGATTTTTTTTTCTTTTATTGGAATTTAGCACCTTTTTGG

>Glyma08g44610.3   sequence type=CDS   gene model=Glyma08g44610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGGTTGGTTCTCGGGGCAGAGTAGCGAGGAGGAGGCGAAGCCGGCGTCGTCGTTGCTCGCCGATTGGAACTCCTACGCATCCGCCCAAACCTCTGAAGATTCATCCACTTTCCCCTTCGATATCGAATCCGCCGTTAGGTCTGCCAACGACACCGTTTCCGGCACTTTCAGCGTGGTTTCTAAAGGTGTGAGAGATCTACCTGGCAACTTCCAGTCTGCCACTAGTAATGTGCCTTCTGGCAAAGCGCTTGTGTATTTTGGTTTGTTTCTGGCAAGTGGAGTCTTCTTTGTTTTCATAGCATTTACATTATTTCTGCCCGTCATGGTAGTTATGCCCCAAAAGTTTGCCCTATGCTTTACACTTGGGTGTGGATTTATTATTGGATCATTCTTTGCTCTCAAGGGTCCAAAGAGTCAGCTTGCTCACATGTTGTCAAAGGAGAGGCTCCCTTTCACATTGGCTTTTTTAGGCAGTATGATTGGTACCATATATGTATCAATGGTGCTTCACAGCTACATTCTCTCTGTGGTATTCTCTGTAGTGCAGGTTCTCTCACTTGGCTACTATTCTATATCGTACTTTCCTGGTGGATCTGCTGGAATGAAATTTCTGACTTCTGCTTTTACCTCTTCAATAATGAAATGTTTTGGGCGGTGA

>Glyma08g44610.4   sequence type=CDS   gene model=Glyma08g44610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGGTTGGTTCTCGGGGCAGAGTAGCGAGGAGGAGGCGAAGCCGGCGTCGTCGTTGCTCGCCGATTGGAACTCCTACGCATCCGCCCAAACCTCTGAAGATTCATCCACTTTCCCCTTCGATATCGAATCCGCCGTTAGGTCTGCCAACGACACCGTTTCCGGCACTTTCAGCGTGGTTTCTAAAGGTGTGAGAGATCTACCTGGCAACTTCCAGTCTGCCACTAGTAATGTGCCTTCTGGCAAAGCGCTTGTGTATTTTGGTTTGTTTCTGGCAAGTGGAGTCTTCTTTGTTTTCATAGCATTTACATTATTTCTGCCCGTCATGGTAGTTATGCCCCAAAAGTTTGCCCTATGCTTTACACTTGGGTGTGGATTTATTATTGGATCATTCTTTGCTCTCAAGGGTCCAAAGAGTCAGCTTGCTCACATGTTGTCAAAGGAGAGGCTCCCTTTCACATTGGCTTTTTTAGGCAGTATGATTGGTACCATATATGTATCAATGGTGCTTCACAGCTACATTCTCTCTGTGGTATTCTCTGTAGTGCAGGTTCTCTCACTTGGCTACTATTCTATATCGTACTTTCCTGGTGGATCTGCTGGAATGAAATTTCTGACTTCTGCTTTTACCTCTTCAATAATGAAATGTTTTGGGCGGTGA

>Glyma08g44610.3   sequence type=predicted peptide   gene model=Glyma08g44610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGWFSGQSSEEEAKPASSLLADWNSYASAQTSEDSSTFPFDIESAVRSANDTVSGTFSVVSKGVRDLPGNFQSATSNVPSGKALVYFGLFLASGVFFVFIAFTLFLPVMVVMPQKFALCFTLGCGFIIGSFFALKGPKSQLAHMLSKERLPFTLAFLGSMIGTIYVSMVLHSYILSVVFSVVQVLSLGYYSISYFPGGSAGMKFLTSAFTSSIMKCFGR*

>Glyma08g44610.4   sequence type=predicted peptide   gene model=Glyma08g44610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGWFSGQSSEEEAKPASSLLADWNSYASAQTSEDSSTFPFDIESAVRSANDTVSGTFSVVSKGVRDLPGNFQSATSNVPSGKALVYFGLFLASGVFFVFIAFTLFLPVMVVMPQKFALCFTLGCGFIIGSFFALKGPKSQLAHMLSKERLPFTLAFLGSMIGTIYVSMVLHSYILSVVFSVVQVLSLGYYSISYFPGGSAGMKFLTSAFTSSIMKCFGR*







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