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Report for Sequence Feature Glyma08g44590

Feature Type:gene_model
Chromosome:Gm08
Start:44160446
stop:44163817
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g44590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56000AT Annotation by Michelle Graham. TAIR10: HEAT SHOCK PROTEIN 81.4 | chr5:22677602-22680067 REVERSE LENGTH=699 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0019 KOG Molecular chaperone (HSP90 family) JGI ISS
PTHR11528Panther HEAT SHOCK PROTEIN 90 JGI ISS
PF00183PFAM Hsp90 protein JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_D6C500UniRef Annotation by Michelle Graham. Best UniRef hit: HSP90-2 n=1 Tax=Glycine max RepID=D6C500_SOYBN SoyBaseE_val: 0ISS
UniRef100_D6C500UniRef Annotation by Michelle Graham. Most informative UniRef hit: HSP90-2 n=1 Tax=Glycine max RepID=D6C500_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g44590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44590
ParalogEvidenceComments
Glyma18g08220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g332900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g44590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g44590
>Glyma08g44590.1   sequence type=CDS   gene model=Glyma08g44590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGACAGAGACGTTTGCTTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGATGCTCAGCCAGAGTTGTTCATTCATATTATTCCAGACAAGACTAACAATACACTGACCATTGTTGACAGTGGTATTGGCATGACCAAAGCTGATTTGGTGAACAACTTGGGTACAATTGCTAGATCTGGTACCAAGGAATTCATGGAAGCCTTGGCTGCTGGTGCTGATGTTAGTATGATTGGACAGTTTGGTGTGGGGTTCTACTCTGCATATCTTGTTGCTGAGAAGGTCATTGTTACAACCAAACACAATGATGATGAACAGTATGTTTGGGAGTCTCAAGCTGGAGGTTCTTTCACTGTCACCAGGGATAACACTGGTGAGGTTCTTGGCAGGGGTACTAAGATCACTCTCTACCTCAAGGAAGATCAGCTTGAGTACCTTGAGGAGCGTCGCTTGAAGGATCTGATCAAGAAGCATTCTGAGTTCATTAGCTACCCAATTTCTCTTTGGATTGAGAAAACTACTGAGAAGGAGATCTCTGATGATGAGGATGAGGAAGAGAAGAAGGATGAGGAGGGTAAGGTGGAGGATGTTGACGAAGAGAAGGAGAAGGAAGAAAAAAAGAAAAAGAAGATTAAGGAAGTGTCACATGAATGGTCCTTGGTGAACAAGCAGAAGCCCATTTGGATGAGAAAGCCTGAGGAGATCACAAAGGAGGAGTATTCTGCTTTCTACAAGAGTCTCACCAATGACTGGGAAGAGCATTTGGCTGTCAAGCACTTCTCAGTTGAGGGACAGTTGGAGTTTAAGGCTATCCTCTTTGTTCCTAAGAGGGCACCTTTTGACCTCTTTGACACAAGGAAGAAGCCTAACAATATTAAGCTTTATGTCCGCCGTGTCTTTATCATGGACAACTGTGAGGAGTTGATTCCTGAGTATTTGGGCTTTGTCAAGGGTATTGTGGATTCCGAAGATCTACCACTCAACATTTCAAGAGAAATGTTGCAACAGAACAAGATCTTGAAGGTCATCAGAAAGAACTTGGTTAAGAAGTGCCTTGAGCTCTTCTTTGAAATTGCAGAGAACAAGGAGGATTACAACAAGTTCTATGAGGCTTTCTCCAAGAACTTGAAGCTAGGTATCCATGAGGATTCACAGAACAAGGGAAAGATTGCTGAATTGCTCAGGTACCACTCCACCAAGAGTGGTGATGAAATGACAAGCCTCAAGGATTATGTGACCAGGATGAAGGAAGGTCAGAGTGACATCTACTACATCACAGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTAGAGAAGTTGAAGAAGAAGGGATACGAGGTTCTTTATATGGTTGATGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGCAAGAAGCTTGTCTCTGCCACCAAGGAAGGGCTCAAGCTTGACGAGAGTGAAGATGAGAAGAAGAAGCAAGAAGAGTTGAAGGAGAAGTTTGACAACCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTTGAGAAGGTTGTGGTCTCTGACCGCGTTGTAGATTCACCATGCTGTCTTGTGACTGGCGAATACGGTTGGACCGCAAACATGGAAAGGATAATGAAGGCCCAAGCTCTAAGGGACAACAGCATGGCAGGGTACATGTCAAGCAAGAAGACCATGGAGATCAACCCTGAGAACCCAATCATGGAGGAGCTCAGGAAGCGTGCTGATGCAGACAAGAATGACAAATCCGTGAAGGACCTTGTTCTGTTGCTGTTTGAGACTGCTCTTCTCACTTCTGGTTTCAGCCTTGACGAGCCCAACACTTTTGGAAACAGGATCCACAGAATGTTGAAGCTTGGACTGAGCATTGACGAGGATGCAGGTGAAGCTGATGCTGAAATGCCCCCACTGGAGGAGGCCGAGGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAA
Predicted protein sequences of Glyma08g44590
>Glyma08g44590.1   sequence type=predicted peptide   gene model=Glyma08g44590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDNTGEVLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYSAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKGKIAELLRYHSTKSGDEMTSLKDYVTRMKEGQSDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFDNLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAGEADAEMPPLEEAEADAEGSKMEEVD*






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