Glyma08g44530 - SoyBase

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Report for Sequence Feature Glyma08g44530

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44127095
stop:	44131103
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55970	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:22668019-22669312 FORWARD LENGTH=343	SoyBase	E_val: 1.00E-148	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2930	KOG	SCF ubiquitin ligase, Rbx1 component	JGI		ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7K4Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7K4Q9_MEDTR	SoyBase	E_val: 3.00E-163	ISS
UniRef100_I1N083	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N083_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g44530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44530

Paralog	Evidence	Comments
Glyma18g08270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g332300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g44530

Limit To All Plant Sequences

>Glyma08g44530.2   sequence type=transcript   gene model=Glyma08g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAGAAGAAAAAATAAAAAAAATCTTTGCGTTGGTTCTAATTTTCTCAGAGAGAGAGAGAGAGAGAGAGTGAAATAAAGGAGGAAAGTTCTGAAAAAATCGAATTCCAACAATTGTTTTCTCAGCAACTCTTACTTGATAGAAAATATAGCTATAGAGGAAGTTGGCCAACGGTTAACTTCCCTCCAAACCTTGAGAGTCTCTTGTAATCAAAGCAAAGTTCAGTAGTCGATTCTTGGTCACCTTCTGAGACTCTAACTTCACCTTCCTGACATACCCTTCACACCAATCTTCCCTTTTTGTTTCCTACCTTCCTTCTATATACACTTCATCTCCACCTCCTCTTCTTCACTCCATAACTCTTTCTTTTCACCATGTTATTGCTAAACGGTTCATGACATGCCCTTGAAAAACCTTGGTTGGTATTAATTGTAGCACTAGCTTTGATTTTGGTGCCAAGTTCTTGAGCTGTGGTGGTGCTGACCCTGAAAAGTTCTCCAAGTCCAACATGAGATAAGGCTGAAATATTGGAGCTGGTTTCAATTAGTAGACAAATTTGGTTGCTGACTTTCGTATTCGTGTGTCTTCAATAGATGGTATTTTTAAATAGAAAGCATAGTTGACAATTTCTTGAATGTTGTTGTTTCTTGCCTTTTGAATTATCTCCAAGACTTCAAATAAGTTGGCTCTCTCCTACAATTTTTTAAATGCTATTATGTTCAGTATTGAGAATCAAACAAGACTTGGTCTCAGGCACAACAGGTTTTTCAATTTTGGACTAGTTCTGATTTGCATACTTATATAGAGGCAAAAGGGGTATCCTCTTTTTCATTATCCTCTATTCATACATATCCAAAGACAACAACATTTCCTTTCAGTACCCCTATTAGTTGAATCAGCATGGCTTCATTTCCTTCAAATTCTGCATTGGAACATAGCATGGCCAGTGCACAACAAAACAGTAACCCTCATGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACTTTCTTGAGAAGAGTATTCCATTACCAAAACGGACCAAGATCCAATCTCGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAGTTGATTGCTTTGTTGGTCCAAATAGCAAGCACAACATTCACTTTGGCCATTTCGAAGAGTGAGAAGCCAATTTGGCCTATGAGAGTGTGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTTCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAAGGGAATAATGCTCTTAGCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGACTTCACATTTGATAGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGATCCTTCCCACAAGCCCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTATTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGGTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGCTTCATTCCAACTTGGACATTGCCAATGACTCTCAAAGCAGTGAAAGATTGATCAACCAAGATCCAGTAAGTGACACAGCTACCTATCATACACAAAATCAGTAACATTTTTTATTTTGATATTATATTAATGTGTACATTCTCTAACAC

Coding sequences of Glyma08g44530

Limit To All Plant Sequences

>Glyma08g44530.1   sequence type=CDS   gene model=Glyma08g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTTCCTTCAAATTCTGCATTGGAACATAGCATGGCCAGTGCACAACAAAACAGTAACCCTCATGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACTTTCTTGAGAAGAGTATTCCATTACCAAAACGGACCAAGATCCAATCTCGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAGTTGATTGCTTTGTTGGTCCAAATAGCAAGCACAACATTCACTTTGGCCATTTCGAAGAGTGAGAAGCCAATTTGGCCTATGAGAGTGTGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTTCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAAGGGAATAATGCTCTTAGCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGACTTCACATTTGATAGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGATCCTTCCCACAAGCCCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTATTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGGTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGCTTCATTCCAACTTGGACATTGCCAATGACTCTCAAAGCAGTGAAAGATTGATCAACCAAGATCCAGAATGTTGCATTTGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCCTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG

>Glyma08g44530.2   sequence type=CDS   gene model=Glyma08g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTTCCTTCAAATTCTGCATTGGAACATAGCATGGCCAGTGCACAACAAAACAGTAACCCTCATGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACTTTCTTGAGAAGAGTATTCCATTACCAAAACGGACCAAGATCCAATCTCGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAGTTGATTGCTTTGTTGGTCCAAATAGCAAGCACAACATTCACTTTGGCCATTTCGAAGAGTGAGAAGCCAATTTGGCCTATGAGAGTGTGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTTCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAAGGGAATAATGCTCTTAGCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGACTTCACATTTGATAGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGATCCTTCCCACAAGCCCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTATTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGGTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGCTTCATTCCAACTTGGACATTGCCAATGACTCTCAAAGCAGTGAAAGATTGATCAACCAAGATCCAGTAAGTGACACAGCTACCTATCATACACAAAATCAGTAA

Predicted protein sequences of Glyma08g44530

Limit To All Plant Sequences

>Glyma08g44530.1   sequence type=predicted peptide   gene model=Glyma08g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFPSNSALEHSMASAQQNSNPHASSPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQIASTTFTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQLHVTQGNNALSLSELEQQRNNEESSVYRTSHLIDKCRSSLELFFAIWFVMGNVWAFDSRFGSFPQAPKLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRYKGLHSNLDIANDSQSSERLINQDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR*

>Glyma08g44530.2   sequence type=predicted peptide   gene model=Glyma08g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFPSNSALEHSMASAQQNSNPHASSPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQIASTTFTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQLHVTQGNNALSLSELEQQRNNEESSVYRTSHLIDKCRSSLELFFAIWFVMGNVWAFDSRFGSFPQAPKLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRYKGLHSNLDIANDSQSSERLINQDPVSDTATYHTQNQ*

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