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Report for Sequence Feature Glyma08g44510

Feature Type:gene_model
Chromosome:Gm08
Start:44110382
stop:44114720
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g44510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13220AT Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685 SoyBaseE_val: 0ISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0010584GO-bp Annotation by Michelle Graham. GO Biological Process: pollen exine formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0061 KOG Transporter, ABC superfamily (Breast cancer resistance protein) JGI ISS
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI ISS
PTHR19241:SF23Panther STEROLIN-2 RELATED JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF01061PFAM ABC-2 type transporter JGI ISS
UniRef100_G7KEK6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter G family member n=1 Tax=Medicago truncatula RepID=G7KEK6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N085UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N085_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g44510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44510
ParalogEvidenceComments
Glyma18g08290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g332100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g44510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g44510
>Glyma08g44510.2   sequence type=CDS   gene model=Glyma08g44510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTGGGAGAGAGGATGAGATTGTGGGCATGTCAATGTCACCCCCCATTAGTTGGATTGGATTTGTGATACAAGAGGATGTGCTTTACCCACAATTAACTGTTGAAGAAACTTTAGTCTTTTCCGCACTCTTGAGGCTGCCAACCCATATGAGCAAGCAGCAAAAATATGCAAAAGTGGATACCACTATCAAGGAGCTAGACCTTGAAAGATGTCGCCACACAAAAATAGTTGGAGGATATCTCAAAGGCATATCAGGAGGAGAAAGGAAGAGAACCTGCATAGGCTATGAAATTCTAGTTGATCATTCACTGTTGCTACTTGATGAACCAACTTCTGGCCTTGATTCAACCGCAGCAAACAAACTCCTTCTCACACTTCTAGGACTTGCTGAGAAAGGCTATCCTGTTTGCTATGGAAAGGCTAAGGACACAATGGAGTACTTTTCATCCTTGAGATTCACCCCACAAATTCCAATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATACGTGTTCCAACAGATATCTTGCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAATATCTACAACTCAAATACAAAACTCTACTGGAGCCAAAAGAAAAAGAAGAGAACCATAGAGGAGCAAACACACCAAAACATTTTCAACTAGCCATTCAGGTTAAGAAGGAGTGGACATTGAGTTGGTTGGACCAATTTGTGATTCTTTCCAGGAGAACATTCAAAATAAGATGCAAGGACTATTTTGATAAGCTAAGACTAGTTCAAGCACTTGGTATTGCACTTTTGTTAGGGCTCCTTTGGTGGAAATCTTCAACCAACACTGAAGCTCAGCTTAGAGATCAGGTTGGTTTAGCTTTCTACATCTGTATATTCTGGACATCTTCATGTATTTTTGGAGCAGTCTATGTCTTTCCATTTGAGAAACTAAGTGTATACTATGCATGTAGCACTCTGTGTGACATGGTGGCACATGTTTTATATCCTACTTTTTTCATGGTCATCTTGTACTTCATGGCTGGCTTTAAGAGGACTGTTGCTAGCTTCTTCTTGACACTATTCACTATTCTGTTAATTGTCATAACAAGTCAAGGAGCAGGAGAACTATTTGGAGCTGCAATCATGAGTGTTCAAAGAGCAGGAACGGCTCCTTCTTTGATACTACTGTTATTCCTTCTCACAGGTGGCTACAATGTCCAGCACATACCAAAGTTCATGAAGTGGTTGAAGTACTTGTCCTTCATGTACTATGGTGACCAATTATATGATTGTGAAAGCAAAGGAGGGTGCAGGACCCTGCAGAGTTCACTTACATTTGGCATTGTAAACTTGAAAGGTGGAAAAAAACAAGTGTGGATTCTTCTGGCCATGGCCTTAGTCTTTCGGTTGTTAGCTTACTTGTGCCTTCGTAGAAGAATTGATCATTCCAACTAA
Predicted protein sequences of Glyma08g44510
>Glyma08g44510.2   sequence type=predicted peptide   gene model=Glyma08g44510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIGREDEIVGMSMSPPISWIGFVIQEDVLYPQLTVEETLVFSALLRLPTHMSKQQKYAKVDTTIKELDLERCRHTKIVGGYLKGISGGERKRTCIGYEILVDHSLLLLDEPTSGLDSTAANKLLLTLLGLAEKGYPVCYGKAKDTMEYFSSLRFTPQIPMNPAEFLLDLATGQVNDIRVPTDILQDQESSDPSKVVIEYLQLKYKTLLEPKEKEENHRGANTPKHFQLAIQVKKEWTLSWLDQFVILSRRTFKIRCKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQLRDQVGLAFYICIFWTSSCIFGAVYVFPFEKLSVYYACSTLCDMVAHVLYPTFFMVILYFMAGFKRTVASFFLTLFTILLIVITSQGAGELFGAAIMSVQRAGTAPSLILLLFLLTGGYNVQHIPKFMKWLKYLSFMYYGDQLYDCESKGGCRTLQSSLTFGIVNLKGGKKQVWILLAMALVFRLLAYLCLRRRIDHSN*






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