Glyma08g44480 - SoyBase

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Report for Sequence Feature Glyma08g44480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44092641
stop:	44097450
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60620	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase I subunit 43 \| chr1:22331225-22333370 FORWARD LENGTH=385	SoyBase	E_val: 0	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG1521	KOG	RNA polymerase I and III, subunit RPA40/RPC40	JGI		ISS
PTHR11800	Panther	DNA-DIRECTED RNA POLYMERASE	JGI		ISS
PTHR11800:SF13	Panther	DNA-DIRECTED RNA POLYMERASE I	JGI		ISS
PF01000	PFAM	RNA polymerase Rpb3/RpoA insert domain	JGI		ISS
PF01193	PFAM	RNA polymerase Rpb3/Rpb11 dimerisation domain	JGI		ISS
UniRef100_G7IXS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase subunit D n=1 Tax=Medicago truncatula RepID=G7IXS2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g44480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g44480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g331900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g44480

Limit To All Plant Sequences

>Glyma08g44480.1   sequence type=CDS   gene model=Glyma08g44480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCGTCGTCATCGTCGTCGTCGTCGTCGGAAGATGAATCTATGTCGGAACAGAGCAATGAATTAGGACTTGATTTCATCTTGAGCTTGGACAATGTTCCATCAAAGCTCCCTCCACACCTCGAACTCTTTAAAACACGTGTTCTTTGCAACAACGATGCTCCTGTGCACACTGATACTGTTCAATATTCCGGTGCCTATGCTATTATGGGAGTTGATAATAGTGTGCGGTTGGATAGCTTCTGTGAAAACTTTAAGGTTGAAGTGAAGCGGCTGACGGATAGCGATATTGAATTTGATATGATTGGAATCGATCCGGCAATTGCCAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCAAACAATACATCGGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCATTCCAATTCGTGCTGATCCCAGGTTATTTGAATATCCAGAAAATGCAGGAGATGACAAAAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTTACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAACAATTCAATTGGTCTTACATATTCGGATATTATACTGGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCGCATGCAGTTAAAGGCACTGGGAAGACACATGCAAAATGGTCCCCAGTTGCCACCACTTGGTATCGGATGCTTCCGGAGGTTGTACTCTTGAAAGATGTTGAGGATGAGCTGGCTGAAGAATTAAAAAACAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGCCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCCCCTGAAGTGCTGTTTACTGAAGCTGTGAAGATTTTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA

Predicted protein sequences of Glyma08g44480

Limit To All Plant Sequences

>Glyma08g44480.1   sequence type=predicted peptide   gene model=Glyma08g44480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSSSSSSSEDESMSEQSNELGLDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS*

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