SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60620 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385 | SoyBase | E_val: 0 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG1521 | KOG | RNA polymerase I and III, subunit RPA40/RPC40 | JGI | ISS | |
| PTHR11800 | Panther | DNA-DIRECTED RNA POLYMERASE | JGI | ISS | |
| PTHR11800:SF13 | Panther | DNA-DIRECTED RNA POLYMERASE I | JGI | ISS | |
| PF01000 | PFAM | RNA polymerase Rpb3/RpoA insert domain | JGI | ISS | |
| PF01193 | PFAM | RNA polymerase Rpb3/Rpb11 dimerisation domain | JGI | ISS | |
| UniRef100_G7IXS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase subunit D n=1 Tax=Medicago truncatula RepID=G7IXS2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KYM4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYM4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g44480 not represented in the dataset |
Glyma08g44480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g331900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g44480.1 sequence type=CDS gene model=Glyma08g44480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCGTCGTCATCGTCGTCGTCGTCGTCGGAAGATGAATCTATGTCGGAACAGAGCAATGAATTAGGACTTGATTTCATCTTGAGCTTGGACAATGTTCCATCAAAGCTCCCTCCACACCTCGAACTCTTTAAAACACGTGTTCTTTGCAACAACGATGCTCCTGTGCACACTGATACTGTTCAATATTCCGGTGCCTATGCTATTATGGGAGTTGATAATAGTGTGCGGTTGGATAGCTTCTGTGAAAACTTTAAGGTTGAAGTGAAGCGGCTGACGGATAGCGATATTGAATTTGATATGATTGGAATCGATCCGGCAATTGCCAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCAAACAATACATCGGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCATTCCAATTCGTGCTGATCCCAGGTTATTTGAATATCCAGAAAATGCAGGAGATGACAAAAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTTACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAACAATTCAATTGGTCTTACATATTCGGATATTATACTGGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCGCATGCAGTTAAAGGCACTGGGAAGACACATGCAAAATGGTCCCCAGTTGCCACCACTTGGTATCGGATGCTTCCGGAGGTTGTACTCTTGAAAGATGTTGAGGATGAGCTGGCTGAAGAATTAAAAAACAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGCCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCCCCTGAAGTGCTGTTTACTGAAGCTGTGAAGATTTTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA
>Glyma08g44480.1 sequence type=predicted peptide gene model=Glyma08g44480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSSSSSSSSEDESMSEQSNELGLDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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