Glyma08g44410 - SoyBase

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Report for Sequence Feature Glyma08g44410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44051592
stop:	44054720
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12590	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF106, transmembrane \| chr4:7451291-7452976 REVERSE LENGTH=246	SoyBase	E_val: 2.00E-160	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3188	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13116	Panther	UNCHARACTERIZED	JGI		ISS
PF01956	PFAM	Integral membrane protein DUF106	JGI		ISS
UniRef100_G7I684	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=2 Tax=Medicago truncatula RepID=G7I684_MEDTR	SoyBase	E_val: 2.00E-165	ISS
UniRef100_I1KYL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYL4_SOYBN	SoyBase	E_val: 2.00E-180	ISS

Expression Patterns of Glyma08g44410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g44410 not represented in the dataset	Glyma08g44410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44410

Paralog	Evidence	Comments
Glyma18g08371	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g331200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g44410

Limit To All Plant Sequences

>Glyma08g44410.4   sequence type=transcript   gene model=Glyma08g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGCAGCATGCCACTAACACTAAGTTTTTTTTTTTAACAATAAACGAAGTGTATTATTAGTATTGAGTTTGTTCCTCCATCGCGAAATTAGGGTTCGCTCACTTGTCTTCAATTTCCCAAATTCACCCTGCACCATCCTTGAATCCTCCAATTGACACGCCTTTTGGATCCATTTTTCTCCGTGAGGCCGTGACGCATCGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCTGTGGTTATGGTTCTCATTGGGGTGCTCCGTTATTTTGTTTCTAAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATAATTCCTCAGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTCTTTAGTCTCATCTTGGGTGAAGAAAATGCTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGGTCTAAGTGCTGAGAAAGACAATCTTGACATAACCCAGCATGACTGGGCCTTACCGAATTTTGAGCAGCGGGCTGAAGCTGTGTTGAGGAAAGTCGTCAGTTAACCATGTTATGATGTAGGAGGCTTAATTGCTTACATTTGCTGGATACTCTCTGGAAATTCTATTGTTGCGGTAGGAGCTGTACCTTTTGCAGCAAAAGATATCAAAGATCATGTTGAGACAATGAGTGGTCTTGAAACTTGACATTTTTCATTTTATTATCAGAGAATGTTGTCACGATTTTGTTGAAGCTAGAACTGAAATTATTCATTCTTGCTTATTTTTCTTAATGCCATAACCATAAGACGCATGAAGGCTTCCCAGGAAATGTTGAGTTCTGTAATGTGTTTCAAGACCTATTCTATCTGTATCCACGCTTGGTACCCATAAGTCCCACTTCCACACTCCTAGAATTTTTACCCAAAATGTTAAATACTCATTTGAATACACGCTCACATTTCTTAACCCGCTTTTGT

Coding sequences of Glyma08g44410

Limit To All Plant Sequences

>Glyma08g44410.3   sequence type=CDS   gene model=Glyma08g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCTGTGGTTATGGTTCTCATTGGGGTGCTCCGTTATTTTGTTTCTAAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATAATTCCTCAGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTCTTTAGTCTCATCTTGGGTGAAGAAAATGCTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGGTCTAAGTGCTGAGAAAGACAATCTTGACATAACCCAGCATGACTGGGCCTTACCGAATTTTGAGCAGCGGGCTGAAGCTGTGTTGAGGAAAGTCGTCAGTTAA

>Glyma08g44410.4   sequence type=CDS   gene model=Glyma08g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCTGTGGTTATGGTTCTCATTGGGGTGCTCCGTTATTTTGTTTCTAAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATAATTCCTCAGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTCTTTAGTCTCATCTTGGGTGAAGAAAATGCTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGGTCTAAGTGCTGAGAAAGACAATCTTGACATAACCCAGCATGACTGGGCCTTACCGAATTTTGAGCAGCGGGCTGAAGCTGTGTTGAGGAAAGTCGTCAGTTAA

Predicted protein sequences of Glyma08g44410

Limit To All Plant Sequences

>Glyma08g44410.3   sequence type=predicted peptide   gene model=Glyma08g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMHSSQTPDAKIVKEGQVIVRARNLRAAANFIPSKAFRARKIYFCNEENGLLFVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGFFSLILGEENAVDDTQRMMQMGGFGFDPSKGLSAEKDNLDITQHDWALPNFEQRAEAVLRKVVS*

>Glyma08g44410.4   sequence type=predicted peptide   gene model=Glyma08g44410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMHSSQTPDAKIVKEGQVIVRARNLRAAANFIPSKAFRARKIYFCNEENGLLFVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGFFSLILGEENAVDDTQRMMQMGGFGFDPSKGLSAEKDNLDITQHDWALPNFEQRAEAVLRKVVS*

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