SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55840 | AT | Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr1:20873943-20876018 FORWARD LENGTH=298 | SoyBase | E_val: 1.00E-105 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| PTHR23324 | Panther | SEC14 RELATED PROTEIN | JGI | ISS | |
| PTHR23324:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00650 | PFAM | CRAL/TRIO domain | JGI | ISS | |
| UniRef100_G7IXR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7IXR9_MEDTR | SoyBase | E_val: 6.00E-136 | ISS |
| UniRef100_UPI0002338F4F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338F4F related cluster n=1 Tax=unknown RepID=UPI0002338F4F | SoyBase | E_val: 0 | ISS |
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Glyma08g44345 not represented in the dataset |
Glyma08g44345 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g330900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g44345.1 sequence type=CDS gene model=Glyma08g44345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTGAATGTCTCCTCCGGTGACTCGTGTGGTGCTGGAACCAGAGCTGCAGGGGCAGATGTTGCAGAAACCAAATCGGCAAAACATGCAAAGATTGGGTTTAGTTATACACAACGTATGATTCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGCTATAAGTGCTGAGAAAGACAATCTTGACATAACCCAGCATGACTGGGCCTTACCGAATTTTGAGCAGCTTGCTGAAGCTGTGTTGAGGCAAGTCGGTCTACCTGTCATTGCTGTTGGTGTTGGTCTCAGTACATATGATAAAGCATCTGAAAAATACTGTATACAATCACACATCCAACTGAATGAATATAGGGATCAAGTGATCTTGCCAACAGCTACAAGGAAACATGGACAATACATTGGCACCACTGTGAAAGTCTTGGATATGACTGGTTTGAAATTTTCAGCATTGAATCAATTGAGGTTGTTGACTGCATTATCTACAATAGATGACTTGAACTATCTGGAAAAGACAGACACATACTATATTGTTAATGTGCCATATGTATTCTCAGCATGCTGGAAGGTTGTGAAGCCTCTTTTGCAAGAAAGAACAAGGAGAAATATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGTAGAAAAGAAGATTCCAAGTCTTCCAAACATCATGCATTAGGAAAAACTGGAAATTGTTTCTCCTTCAATCACGCTTTCCATCAACAACTCTACAATCACATCAAGCAACAATCCATCATTGTGGAGTCAATTTCACCAATCAGACATGGGTCCTTCTATGTAGAGATACAAGAGTCAGACCCTGATGATGCCAAAATAGCCAAGACCATAGAAACTGAGTTCCACAAATTGGAGAATCAGAAGAATGGCTTTAGCAACTCACTAAATGGTCTGACAGTTAATGGCCATTGA
>Glyma08g44345.1 sequence type=predicted peptide gene model=Glyma08g44345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLNVSSGDSCGAGTRAAGADVAETKSAKHAKIGFSYTQRMIQMGGFGFDPSKAISAEKDNLDITQHDWALPNFEQLAEAVLRQVGLPVIAVGVGLSTYDKASEKYCIQSHIQLNEYRDQVILPTATRKHGQYIGTTVKVLDMTGLKFSALNQLRLLTALSTIDDLNYLEKTDTYYIVNVPYVFSACWKVVKPLLQERTRRNIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHHALGKTGNCFSFNHAFHQQLYNHIKQQSIIVESISPIRHGSFYVEIQESDPDDAKIAKTIETEFHKLENQKNGFSNSLNGLTVNGH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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