Glyma08g44320 - SoyBase

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Report for Sequence Feature Glyma08g44320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	44005433
stop:	44011089
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55850	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase like E1 \| chr1:20876752-20879414 FORWARD LENGTH=729	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016759	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity	SoyBase	N/A	ISS
GO:0016760	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF23	Panther		JGI		ISS
PF03552	PFAM	Cellulose synthase	JGI		ISS
UniRef100_G7IV17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase-like protein E1 n=1 Tax=Medicago truncatula RepID=G7IV17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338E1E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E1E related cluster n=1 Tax=unknown RepID=UPI0002338E1E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g44320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g44320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g330700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g44320

Limit To All Plant Sequences

>Glyma08g44320.2   sequence type=transcript   gene model=Glyma08g44320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATGCCTTAGTATTGGCTACAAATACCAATGCAACTAATAGCAAAAAAACCAAATTGTGTAGAACAAGACACACATAATTAGCATAGTTATTATGGGGAGGGTTGAGTACTCCCCATTGTTTGAGACAAGAAGGTGCAGAGGAAGGTTCATCTACAGGTCCTTTGCAATCTCATTATTTGTGGCCATATGCTTTATATGGCATTACAGATTTAGCCACATAACAAAGGGTGAAGATGGAAACTGGGCATGGCTTGGTATGCTTGCTTCAGAGCTGTGGTTTGGCTTTTACTGGGTCCTTACTCAAGCCCTTAGATGGAACCTTGTGTTCAGACAACCCTTCAAAAACAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAAGAGTGGACATATTTGTGTGCACAGCAGATCCAGATATTGAGCCAGCAATGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAAAAATTGAGTGTGTATCTCTCTGATGATGCTGGATCGCAAATCACGTTCTATGCTCTGCTAGAGGCTTCAAACTTTGCAAAACATTGGGTCCCATTCTGCAAGAGGTTCAAAGTGGAACCCAGGTCACCATCTGCATATTTTAAAAGCTTAGTCTCATCAGGTTACCCTACAGACCCAAGCCAAGCCAAAGAACTGGGAAATATTAAGAAATTATACGACGAAATGGAAAAACGCATTGAAGATGCGACCAAATTTGGTGAAGTAGCCAAAGAAGCACGTTTAAAGCATATGGGGTTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATACTACTTCATAAAAACGACCATAATAATTCAAAAGATGTAGATGGGTTCGTTTTGCCAGCTCTGGTGTATTTGGCCCGCGAGAAGAGACCCCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTCTCTTCGAATATCAGCAATGGGAAAATAATTCTAAATGTAGACTGTGACATGTACTCAAACAACTCACAATCAGTGAGAGATGCTCTCTGCTTTTTCATGGATGAAGAGAAAGGACAAGAAATTGCCTATGTGCAGTTTCCTCAGACTTTTGAGAATGCCACTAAGAATGATTTATATGGGGGTAGTCTAACATCAATATTAGAGGTGGAGTTCCCTGGGTTGGATGGTTATGGCGGTCCCTTGTATGCAGGAACTGGTTGCTTTCACAAGAGAGAGTCTCTTTGTGGGATGAAATTCAGTGATCAATATTGCAATGACTGGAATAGTGAAGATGATCAGTTTAAAGAAGCAAACCTGCAAGAACTAGAACAACAATCAAAGGTTCTTGCAAGCTGCAACTATGAGGAAAACACACTATGGGGAAAAGAGATGGGTTTAAAATATGGGTGTCCAGTGGAGGATGTGATAACAGGATTGTCTATACAGTGCCAAGGGTGGAAATCAGTGTACTACAACCCACCAAGGAAGGCTTTCTTAGGTTTAGCTCCAACTACCTTGCCTCAAACACTTGTTCAGCACAAGAGATGGTCTGAAGGAGACTTGCAAATTTTGCTTTCTAAATACAGCCCTGCATGGTATGGTTTTGGAAGGATCAATTTTGGGCTCCAAATGGGATATAGTGTTTATTGCTTATGGGCACCTAATTGTTTAGCAACACTATACTATTCTATCATCCCTTCACTGTACCTCCTTAAAGGCATTCCCTTGTTTCCCAAGGTAACAAAACAATCCCTTTCATAACTGCTTAATCTTAATTAAATAAATGGACCCTCCCCCTCGTAATCTGTTGTTTTTTGTTTCAGGAGAAAGAAAAAGTAGAAAAAGGAAGTAGTATAAAATGGAATGTAAAAATGTATTTTAGAATTGTAGGAACTTATATTTTTATTGAATGAAACTCATATTTAGCAAGCTCAGTTAGTCATTACAATTCTGTTTCTTTTTTCTGCTTGTTTTATTTTACTCTTTATTTACATATTAATTTTTATTTTAATTTTATTTTTGACTTTGGGATTTCAAGATGTTGTGGATTTGTAATGAGATGTTCATAATATTGGTCTTTAGGGAACAGAAAACAAAATCAAAGTGGAAAAACATGTTAGGATTATTATTAATATGTGCATGCATCATTATTCTACATATATAGATTTGTGATTATGCATGTAACTTTTCTAAGCAAATAAATAATTATTATTGAGCATACATGTGTTTAATTGATTCTTGGTGGATTCATCAGATATCAAGTCCATGGTTCATACCTTTTGCATATGTCATTGTTGGGGAAACTACTTATAGTTTATTGGAGTTTTTCTTCTGTGGGGGCACATTTCAAGGTTGGTGGAATGACCAACGAATATGGCTATACAAAAGAACAAGCTCTTACCTATTTGCCTGCATTGACACCATTTTGAAGCTTTTTGGGTTCTCAGAATCAACTTTTACAATCACAACTAAGGTTACTGAAGAAGATGCTTCTAAACGCCATGAGAAAGAAATAATGGAGTTTGGAACCTCCTCTCCAATGCTCACTGTATTAGCCACTCTTGCATTGCTCAATTTATTTTGTTTTCTTAGTGTATTGAAGGATGCAATCCTAGGTGAAGGTGACATTGGAGCTTATGAGACAATGGGGTTGCAAGTTCTATTGTGTGGTTTTCTTGTTTTCATCAATTTGCCTATATACCAAGGACTTTTCTTAAGGAAGGACAATGGAAGATTGCCTAGCTCTATTGCCATCAAATCAATAGTATTTGCTCTAGGAGTATTCATATCCTTCATCTTTACATGACCACACAATAAAGTGTGTTTATTAGCACATTATTTAGTTTTGCCCTTGCCTGCTTCAGAGTTTTGTGACAAGAAATTCTTAAGGTAAAACATTAGTTTAAAATCTTCAGAATGGAACTCGAATCCATATTGAATATAATTAATTATGTATGGCATCAATTTAAATAATGTTATTAGTTGATTCTATCAAGTTTATTTAAATTTTTGCGATAAAGTAATATTTACAAGGGTGTTAGCTTACTCGCATAATCA

Coding sequences of Glyma08g44320

Limit To All Plant Sequences

>Glyma08g44320.1   sequence type=CDS   gene model=Glyma08g44320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGGTTGAGTACTCCCCATTGTTTGAGACAAGAAGGTGCAGAGGAAGGTTCATCTACAGGTCCTTTGCAATCTCATTATTTGTGGCCATATGCTTTATATGGCATTACAGATTTAGCCACATAACAAAGGGTGAAGATGGAAACTGGGCATGGCTTGGTATGCTTGCTTCAGAGCTGTGGTTTGGCTTTTACTGGGTCCTTACTCAAGCCCTTAGATGGAACCTTGTGTTCAGACAACCCTTCAAAAACAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAAGAGTGGACATATTTGTGTGCACAGCAGATCCAGATATTGAGCCAGCAATGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAAAAATTGAGTGTGTATCTCTCTGATGATGCTGGATCGCAAATCACGTTCTATGCTCTGCTAGAGGCTTCAAACTTTGCAAAACATTGGGTCCCATTCTGCAAGAGGTTCAAAGTGGAACCCAGGTCACCATCTGCATATTTTAAAAGCTTAGTCTCATCAGGTTACCCTACAGACCCAAGCCAAGCCAAAGAACTGGGAAATATTAAGAAATTATACGACGAAATGGAAAAACGCATTGAAGATGCGACCAAATTTGGTGAAGTAGCCAAAGAAGCACGTTTAAAGCATATGGGGTTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATACTACTTCATAAAAACGACCATAATAATTCAAAAGATGTAGATGGGTTCGTTTTGCCAGCTCTGGTGTATTTGGCCCGCGAGAAGAGACCCCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTCTCTTCGAATATCAGCAATGGGAAAATAATTCTAAATGTAGACTGTGACATGTACTCAAACAACTCACAATCAGTGAGAGATGCTCTCTGCTTTTTCATGGATGAAGAGAAAGGACAAGAAATTGCCTATGTGCAGTTTCCTCAGACTTTTGAGAATGCCACTAAGAATGATTTATATGGGGGTAGTCTAACATCAATATTAGAGGTGGAGTTCCCTGGGTTGGATGGTTATGGCGGTCCCTTGTATGCAGGAACTGGTTGCTTTCACAAGAGAGAGTCTCTTTGTGGGATGAAATTCAGTGATCAATATTGCAATGACTGGAATAGTGAAGATGATCAGTTTAAAGAAGCAAACCTGCAAGAACTAGAACAACAATCAAAGGTTCTTGCAAGCTGCAACTATGAGGAAAACACACTATGGGGAAAAGAGATGGGTTTAAAATATGGGTGTCCAGTGGAGGATGTGATAACAGGATTGTCTATACAGTGCCAAGGGTGGAAATCAGTGTACTACAACCCACCAAGGAAGGCTTTCTTAGGTTTAGCTCCAACTACCTTGCCTCAAACACTTGTTCAGCACAAGAGATGGTCTGAAGGAGACTTGCAAATTTTGCTTTCTAAATACAGCCCTGCATGGTATGGTTTTGGAAGGATCAATTTTGGGCTCCAAATGGGATATAGTGTTTATTGCTTATGGGCACCTAATTGTTTAGCAACACTATACTATTCTATCATCCCTTCACTGTACCTCCTTAAAGGCATTCCCTTGTTTCCCAAGATATCAAGTCCATGGTTCATACCTTTTGCATATGTCATTGTTGGGGAAACTACTTATAGTTTATTGGAGTTTTTCTTCTGTGGGGGCACATTTCAAGGTTGGTGGAATGACCAACGAATATGGCTATACAAAAGAACAAGCTCTTACCTATTTGCCTGCATTGACACCATTTTGAAGCTTTTTGGGTTCTCAGAATCAACTTTTACAATCACAACTAAGGTTACTGAAGAAGATGCTTCTAAACGCCATGAGAAAGAAATAATGGAGTTTGGAACCTCCTCTCCAATGCTCACTGTATTAGCCACTCTTGCATTGCTCAATTTATTTTGTTTTCTTAGTGTATTGAAGGATGCAATCCTAGGTGAAGGTGACATTGGAGCTTATGAGACAATGGGGTTGCAAGTTCTATTGTGTGGTTTTCTTGTTTTCATCAATTTGCCTATATACCAAGGACTTTTCTTAAGGAAGGACAATGGAAGATTGCCTAGCTCTATTGCCATCAAATCAATAGTATTTGCTCTAGGAGTATTCATATCCTTCATCTTTACATGA

>Glyma08g44320.2   sequence type=CDS   gene model=Glyma08g44320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGGTTGAGTACTCCCCATTGTTTGAGACAAGAAGGTGCAGAGGAAGGTTCATCTACAGGTCCTTTGCAATCTCATTATTTGTGGCCATATGCTTTATATGGCATTACAGATTTAGCCACATAACAAAGGGTGAAGATGGAAACTGGGCATGGCTTGGTATGCTTGCTTCAGAGCTGTGGTTTGGCTTTTACTGGGTCCTTACTCAAGCCCTTAGATGGAACCTTGTGTTCAGACAACCCTTCAAAAACAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAAGAGTGGACATATTTGTGTGCACAGCAGATCCAGATATTGAGCCAGCAATGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAAAAATTGAGTGTGTATCTCTCTGATGATGCTGGATCGCAAATCACGTTCTATGCTCTGCTAGAGGCTTCAAACTTTGCAAAACATTGGGTCCCATTCTGCAAGAGGTTCAAAGTGGAACCCAGGTCACCATCTGCATATTTTAAAAGCTTAGTCTCATCAGGTTACCCTACAGACCCAAGCCAAGCCAAAGAACTGGGAAATATTAAGAAATTATACGACGAAATGGAAAAACGCATTGAAGATGCGACCAAATTTGGTGAAGTAGCCAAAGAAGCACGTTTAAAGCATATGGGGTTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATACTACTTCATAAAAACGACCATAATAATTCAAAAGATGTAGATGGGTTCGTTTTGCCAGCTCTGGTGTATTTGGCCCGCGAGAAGAGACCCCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTCTCTTCGAATATCAGCAATGGGAAAATAATTCTAAATGTAGACTGTGACATGTACTCAAACAACTCACAATCAGTGAGAGATGCTCTCTGCTTTTTCATGGATGAAGAGAAAGGACAAGAAATTGCCTATGTGCAGTTTCCTCAGACTTTTGAGAATGCCACTAAGAATGATTTATATGGGGGTAGTCTAACATCAATATTAGAGGTGGAGTTCCCTGGGTTGGATGGTTATGGCGGTCCCTTGTATGCAGGAACTGGTTGCTTTCACAAGAGAGAGTCTCTTTGTGGGATGAAATTCAGTGATCAATATTGCAATGACTGGAATAGTGAAGATGATCAGTTTAAAGAAGCAAACCTGCAAGAACTAGAACAACAATCAAAGGTTCTTGCAAGCTGCAACTATGAGGAAAACACACTATGGGGAAAAGAGATGGGTTTAAAATATGGGTGTCCAGTGGAGGATGTGATAACAGGATTGTCTATACAGTGCCAAGGGTGGAAATCAGTGTACTACAACCCACCAAGGAAGGCTTTCTTAGGTTTAGCTCCAACTACCTTGCCTCAAACACTTGTTCAGCACAAGAGATGGTCTGAAGGAGACTTGCAAATTTTGCTTTCTAAATACAGCCCTGCATGGTATGGTTTTGGAAGGATCAATTTTGGGCTCCAAATGGGATATAGTGTTTATTGCTTATGGGCACCTAATTGTTTAGCAACACTATACTATTCTATCATCCCTTCACTGTACCTCCTTAAAGGCATTCCCTTGTTTCCCAAGGTAACAAAACAATCCCTTTCATAA

Predicted protein sequences of Glyma08g44320

Limit To All Plant Sequences

>Glyma08g44320.1   sequence type=predicted peptide   gene model=Glyma08g44320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRVEYSPLFETRRCRGRFIYRSFAISLFVAICFIWHYRFSHITKGEDGNWAWLGMLASELWFGFYWVLTQALRWNLVFRQPFKNRLSQRYEKKLPRVDIFVCTADPDIEPAMMVINTVLSVMAYDYPTEKLSVYLSDDAGSQITFYALLEASNFAKHWVPFCKRFKVEPRSPSAYFKSLVSSGYPTDPSQAKELGNIKKLYDEMEKRIEDATKFGEVAKEARLKHMGFSQWDSYSSRRDHDTILQILLHKNDHNNSKDVDGFVLPALVYLAREKRPQYFHNFKAGAMNSLLRVSSNISNGKIILNVDCDMYSNNSQSVRDALCFFMDEEKGQEIAYVQFPQTFENATKNDLYGGSLTSILEVEFPGLDGYGGPLYAGTGCFHKRESLCGMKFSDQYCNDWNSEDDQFKEANLQELEQQSKVLASCNYEENTLWGKEMGLKYGCPVEDVITGLSIQCQGWKSVYYNPPRKAFLGLAPTTLPQTLVQHKRWSEGDLQILLSKYSPAWYGFGRINFGLQMGYSVYCLWAPNCLATLYYSIIPSLYLLKGIPLFPKISSPWFIPFAYVIVGETTYSLLEFFFCGGTFQGWWNDQRIWLYKRTSSYLFACIDTILKLFGFSESTFTITTKVTEEDASKRHEKEIMEFGTSSPMLTVLATLALLNLFCFLSVLKDAILGEGDIGAYETMGLQVLLCGFLVFINLPIYQGLFLRKDNGRLPSSIAIKSIVFALGVFISFIFT*

>Glyma08g44320.2   sequence type=predicted peptide   gene model=Glyma08g44320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRVEYSPLFETRRCRGRFIYRSFAISLFVAICFIWHYRFSHITKGEDGNWAWLGMLASELWFGFYWVLTQALRWNLVFRQPFKNRLSQRYEKKLPRVDIFVCTADPDIEPAMMVINTVLSVMAYDYPTEKLSVYLSDDAGSQITFYALLEASNFAKHWVPFCKRFKVEPRSPSAYFKSLVSSGYPTDPSQAKELGNIKKLYDEMEKRIEDATKFGEVAKEARLKHMGFSQWDSYSSRRDHDTILQILLHKNDHNNSKDVDGFVLPALVYLAREKRPQYFHNFKAGAMNSLLRVSSNISNGKIILNVDCDMYSNNSQSVRDALCFFMDEEKGQEIAYVQFPQTFENATKNDLYGGSLTSILEVEFPGLDGYGGPLYAGTGCFHKRESLCGMKFSDQYCNDWNSEDDQFKEANLQELEQQSKVLASCNYEENTLWGKEMGLKYGCPVEDVITGLSIQCQGWKSVYYNPPRKAFLGLAPTTLPQTLVQHKRWSEGDLQILLSKYSPAWYGFGRINFGLQMGYSVYCLWAPNCLATLYYSIIPSLYLLKGIPLFPKVTKQSLS*

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