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Report for Sequence Feature Glyma08g44300

Feature Type:gene_model
Chromosome:Gm08
Start:43988734
stop:43991539
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g44300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07680AT Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208 SoyBaseE_val: 3.00E-87ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030134GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ER to Golgi transport vesicle SoyBaseN/AISS
GO:0008320GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity SoyBaseN/AISS
KOG1692 KOG Putative cargo transport protein EMP24 (p24 protein family) JGI ISS
PTHR22811Panther COPII-COATED VESICLE MEMBRANE PROTEIN JGI ISS
PTHR22811:SF8Panther COATED VESICLE MEMBRANE PROTEIN JGI ISS
PF01105PFAM emp24/gp25L/p24 family/GOLD JGI ISS
UniRef100_G7IV10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane emp24 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IV10_MEDTR SoyBaseE_val: 9.00E-101ISS
UniRef100_I1KYK6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KYK6_SOYBN SoyBaseE_val: 2.00E-107ISS

Expression Patterns of Glyma08g44300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44300
ParalogEvidenceComments
Glyma18g08400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g330500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g44300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g44300
>Glyma08g44300.2   sequence type=CDS   gene model=Glyma08g44300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTGGGGCTATCAAATTTTGCCACTGCAGTTGTAATCTTTTCCAGCCTGGATGCAGTGCTTGGGATCAGATTTGTGATTGACAAAGAAGATTTTTTCTCTCATAATGTTCAATATGAAGGGGATAGAGTCCATGCTTCATTTGTTGTGATCAAGGTTGATACATCTTGGCAACATACTCATGAGGGTGTAGACCTTTCGGTGAAAGGACCTTCTGGTGAACCAATTAAAGATTTTCATGACATGACAAGTGAAATATTCGAATTTGTGGCACGAAACAGTGGACCCTATCGCTTCTGCTTCATCAACAAGTCTCCCTATCATGAAACAGTTGATTTTGATGTCCATTCTAACCACATTCATTTCACTGATCAGCATGCAAAAGATGAGCATTTAACTCCTTTGTTGGATCAGATAGTAAAGTTAGAGCAAGCTCTTTTCAACATTCAGTATGAACAGCATTGGCTTGAGGCTCAGACAGAACGCCAGGCAATAGCAAGCAATGCAATGAGCTCCAGAGCAATTCACAAGGCCTTACTTGAATCAATGACACTAATGGGTGCCAGTGCCCTCCAAGTTTATCTTCTCCGTCGCCTCTTTGAAAGAAAGCCTGCCTATAGAGTTCAAGTACCTGAACGTTGA
Predicted protein sequences of Glyma08g44300
>Glyma08g44300.2   sequence type=predicted peptide   gene model=Glyma08g44300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLGLSNFATAVVIFSSLDAVLGIRFVIDKEDFFSHNVQYEGDRVHASFVVIKVDTSWQHTHEGVDLSVKGPSGEPIKDFHDMTSEIFEFVARNSGPYRFCFINKSPYHETVDFDVHSNHIHFTDQHAKDEHLTPLLDQIVKLEQALFNIQYEQHWLEAQTERQAIASNAMSSRAIHKALLESMTLMGASALQVYLLRRLFERKPAYRVQVPER*






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