Glyma08g44200 - SoyBase

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Report for Sequence Feature Glyma08g44200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43917588
stop:	43919723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g44200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06600	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 \| chr5:2020682-2027834 REVERSE LENGTH=985	SoyBase	E_val: 5.00E-31	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_G7LEE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR	SoyBase	E_val: 1.00E-76	ISS
UniRef100_I1N0A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0A2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g44200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g44200

Paralog	Evidence	Comments
Glyma18g08540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g44200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g329800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g44200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g44200

Limit To All Plant Sequences

>Glyma08g44200.2   sequence type=transcript   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATAAGAATGGAAAACTTAAATTGACGTTTGAGAAGTTCACATGGACGATTAGTAACTTCTCTAAATTGGACTCCAAGAAACTGTACTCTGAGAAGAAGATTCTTGCCTATCCAAAGGGGACTGATGTGGGCTACTTGTCAATTTATTTAGATGCTGGTGTTGTTAATTTGCCTTTTGGCTGGAGCAAATTTGCAAATTTCAAGTTCGCTTTAATTAATCAGGCCAATGACAAAATGACTAAAATAAAAGAAACTACAAAACAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACACTTAGATGAACTTAATGATTCTAGCAGTGGGTTTATGGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAACAGGAGAATCAAGTAGATCAACAAGTTAACAAGATTGATGATAATCATGATATTGATAAGCCTATTAAACACACAGATATCTTCTTACCCAAGGAAACGTTCCCAACCTCATTTGGTGAGCTAGTTGATTTCCAAGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCATTGTTAGAAGAAGTATTTTCTCGACATCCCTCACTCATTGATTGTCAGCAAAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTTTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCTTGCAATAATCTTCAAATTTTTTGGGAGGAATTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGCTATGAAAACTTGTATTGAGAGAGCTGTTCGGGTGAAAAGGACGAGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTCAAGCAGAGGTAGATCTTGAAATAGCAAGAAGAGACTTCGTGAAAGCAAAAGAAGGCTTTGAAGAGTGCGATTTGGATGCTGAACTAGGCTATGGAGAACCATAA

>Glyma08g44200.3   sequence type=transcript   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTTCACATTCATCAGCAGGTTGGCTGGCAAGTTATTGAAATGAAGAATAAGAATGGAAAACTTAAATTGACGTTTGAGAAGTTCACATGGACGATTAGTAACTTCTCTAAATTGGACTCCAAGAAACTGTACTCTGAGAAGTTTTAGCTCGATCACCATACATGGAAGATTCTTGCCTATCCAAAGGGGACTGATGTGGGCTACTTGTCAATTTATTTAGATGCTGGTGTTGTTAATTTGCCTTTTGGCTGGAGCAAATTTGCAAATTTCAAGTTCGCTTTAATTAATCAGGCCAATGACAAAATGACTAAAATAAAAGAAACTACAAAACAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACACTTAGATGAACTTAATGATTCTAGCAGTGGGTTTATGGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAACAGGAGAATCAAGTAGATCAACAAGTTAACAAGATTGATGATAATCATGATATTGATAAGCCTATTAAACACACAGATATCTTCTTACCCAAGGAAACGTTCCCAACCTCATTTGGTGAGCTAGTTGATTTCCAAGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCATTGTTAGAAGAAGTATTTTCTCGACATCCCTCACTCATTGATTGTCAGCAAAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTTTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCTTGCAATAATCTTCAAATTTTTTGGGAGGAATTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGCTATGAAAACTTGTATTGAGAGAGCTGTTCGGGTGAAAAGGACGAGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTCAAGCAGAGGTAGATCTTGAAATAGCAAGAAGAGACTTCGTGAAAGCAAAAGAAGGCTTTGAAGAGTGCGATTTGGATGCTGAACTAGGCTATGGAGAACCATAATTTGATATTATGTCACTTGTTGAAGAATATTTCAGTAGAGCTAGCCTACATGTTTTGGATGAGCATTCCTAAACACCTGAGTGTTCTTCTAGACATCAAATCATCAATGAACTTGAAAGTACTCAAACTCAAAGC

Coding sequences of Glyma08g44200

Limit To All Plant Sequences

>Glyma08g44200.1   sequence type=CDS   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAAAATAAAAGAAACTACAAAACAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACACTTAGATGAACTTAATGATTCTAGCAGTGGGTTTATGGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAACAGGAGAATCAAGTAGATCAACAAGTTAACAAGATTGATGATAATCATGATATTGATAAGCCTATTAAACACACAGATATCTTCTTACCCAAGGAAACGTTCCCAACCTCATTTGGTGAGCTAGTTGATTTCCAAGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCATTGTTAGAAGAAGTATTTTCTCGACATCCCTCACTCATTGATTGTCAGCAAAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTTTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCTTGCAATAATCTTCAAATTTTTTGGGAGGAATTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGCTATGAAAACTTGTATTGAGAGAGCTGTTCGGGTGAAAAGGACGAGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTCAAGCAGAGGTAGATCTTGAAATAGCAAGAAGAGACTTCGTGAAAGCAAAAGAAGGCTTTGAAGAGTGCGATTTGGATGCTGAACTAGGCTATGGAGAACCATAA

>Glyma08g44200.2   sequence type=CDS   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATAAGAATGGAAAACTTAAATTGACGTTTGAGAAGTTCACATGGACGATTAGTAACTTCTCTAAATTGGACTCCAAGAAACTGTACTCTGAGAAGAAGATTCTTGCCTATCCAAAGGGGACTGATGTGGGCTACTTGTCAATTTATTTAGATGCTGGTGTTGTTAATTTGCCTTTTGGCTGGAGCAAATTTGCAAATTTCAAGTTCGCTTTAATTAATCAGGCCAATGACAAAATGACTAAAATAAAAGAAACTACAAAACAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACACTTAGATGAACTTAATGATTCTAGCAGTGGGTTTATGGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAACAGGAGAATCAAGTAGATCAACAAGTTAACAAGATTGATGATAATCATGATATTGATAAGCCTATTAAACACACAGATATCTTCTTACCCAAGGAAACGTTCCCAACCTCATTTGGTGAGCTAGTTGATTTCCAAGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCATTGTTAGAAGAAGTATTTTCTCGACATCCCTCACTCATTGATTGTCAGCAAAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTTTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCTTGCAATAATCTTCAAATTTTTTGGGAGGAATTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGCTATGAAAACTTGTATTGAGAGAGCTGTTCGGGTGAAAAGGACGAGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTCAAGCAGAGGTAGATCTTGAAATAGCAAGAAGAGACTTCGTGAAAGCAAAAGAAGGCTTTGAAGAGTGCGATTTGGATGCTGAACTAGGCTATGGAGAACCATAA

>Glyma08g44200.3   sequence type=CDS   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAAAATAAAAGAAACTACAAAACAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACACTTAGATGAACTTAATGATTCTAGCAGTGGGTTTATGGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAACAGGAGAATCAAGTAGATCAACAAGTTAACAAGATTGATGATAATCATGATATTGATAAGCCTATTAAACACACAGATATCTTCTTACCCAAGGAAACGTTCCCAACCTCATTTGGTGAGCTAGTTGATTTCCAAGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCATTGTTAGAAGAAGTATTTTCTCGACATCCCTCACTCATTGATTGTCAGCAAAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTTTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCTTGCAATAATCTTCAAATTTTTTGGGAGGAATTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGCTATGAAAACTTGTATTGAGAGAGCTGTTCGGGTGAAAAGGACGAGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTCAAGCAGAGGTAGATCTTGAAATAGCAAGAAGAGACTTCGTGAAAGCAAAAGAAGGCTTTGAAGAGTGCGATTTGGATGCTGAACTAGGCTATGGAGAACCATAA

Predicted protein sequences of Glyma08g44200

Limit To All Plant Sequences

>Glyma08g44200.1   sequence type=predicted peptide   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKIKETTKQFNATEIAWGFPKFIHLDELNDSSSGFMVNDTCIIEVQILVSKSEQENQVDQQVNKIDDNHDIDKPIKHTDIFLPKETFPTSFGELVDFQGLGKIEQAFVPLLEEVFSRHPSLIDCQQKRSGRFVEWAFTALGRVLHFLKTKKVKDMDGDACNNLQIFWEELKMFRFDLTWLEPHVQSALAMKTCIERAVRVKRTREDVTALEMETKRLKAKMIQAEVDLEIARRDFVKAKEGFEECDLDAELGYGEP*

>Glyma08g44200.2   sequence type=predicted peptide   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNKNGKLKLTFEKFTWTISNFSKLDSKKLYSEKKILAYPKGTDVGYLSIYLDAGVVNLPFGWSKFANFKFALINQANDKMTKIKETTKQFNATEIAWGFPKFIHLDELNDSSSGFMVNDTCIIEVQILVSKSEQENQVDQQVNKIDDNHDIDKPIKHTDIFLPKETFPTSFGELVDFQGLGKIEQAFVPLLEEVFSRHPSLIDCQQKRSGRFVEWAFTALGRVLHFLKTKKVKDMDGDACNNLQIFWEELKMFRFDLTWLEPHVQSALAMKTCIERAVRVKRTREDVTALEMETKRLKAKMIQAEVDLEIARRDFVKAKEGFEECDLDAELGYGEP*

>Glyma08g44200.3   sequence type=predicted peptide   gene model=Glyma08g44200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKIKETTKQFNATEIAWGFPKFIHLDELNDSSSGFMVNDTCIIEVQILVSKSEQENQVDQQVNKIDDNHDIDKPIKHTDIFLPKETFPTSFGELVDFQGLGKIEQAFVPLLEEVFSRHPSLIDCQQKRSGRFVEWAFTALGRVLHFLKTKKVKDMDGDACNNLQIFWEELKMFRFDLTWLEPHVQSALAMKTCIERAVRVKRTREDVTALEMETKRLKAKMIQAEVDLEIARRDFVKAKEGFEECDLDAELGYGEP*

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