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Report for Sequence Feature Glyma08g44190
Feature Type: gene_model
Chromosome: Gm08
Start: 43912703
stop: 43916904
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g44190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G62940 AT
Annotation by Michelle Graham. TAIR10: acyl-CoA synthetase 5 | chr1:23310554-23312747 FORWARD LENGTH=542
SoyBase E_val: 0 ISS
GO:0001676 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0010584 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen exine formation
SoyBase N/A ISS
GO:0046949 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty-acyl-CoA biosynthetic process
SoyBase N/A ISS
GO:0080110 GO-bp
Annotation by Michelle Graham. GO Biological Process: sporopollenin biosynthetic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004467 GO-mf
Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
GO:0016207 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity
SoyBase N/A ISS
GO:0031956 GO-mf
Annotation by Michelle Graham. GO Molecular Function: medium-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
KOG1176
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24096:SF43 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_B9GMK1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl:coa ligase n=1 Tax=Populus trichocarpa RepID=B9GMK1_POPTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338E1C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338E1C related cluster n=1 Tax=unknown RepID=UPI0002338E1C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g44190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g44190
Paralog Evidence Comments
Glyma18g08550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g44190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g329700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g44190
Transcripts of Glyma08g44190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g44190.2 sequence type=transcript gene model=Glyma08g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGACCCCCCGCATGACAAATTTGCAATGCAACTTCACATGTAACAAGCTAACCCTCTCACCATGCAAAGAGTATGACTTAGAAATGTCCATATAATGTCACATTCTCAACCCCATTATAGTGAAGTACATACAACATTCTCAGTTGCTTATCCACACACACTCAAACATGGGAACCTATGTGGAAAATTTCGCAAGTGAGGAGGAACATGTCTTTCGTAGCCAATACTCATCTGTCCCTGTCCCTGACAATGTGACATTGCCGGAATTCGTGCTCCAAAATGCTGAATTGTATGCAGACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGGTTACTTTTAGTGAGGTGGTGAGGGGTGTACACAGGTTTTCAAAGGCCTTAAGATCTCTTGGTCTGAGGAAAGGCCTTGTTGTGATTGTAGTGCTTCCAAATGTGGTAGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGTGCAAATCCAACATCACATGTATCAGAAATTAAGAAGCAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATGTCACAAACTATGAAAAGGTGAAGGCTTTGGAGCTACCTATTATTGTGCTAGGAGATGAAGTTGTTGAAGGTGCCATGAATTGGAACAAGTTGCTTGAAGCAGCAGACCGTGCAGGTGATGATTTGGCAAGGGAGCCTATTCAGCAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTAGTGGCTAATCTTTGCTCTACACTCTTTGGTGTGACCAAAGAAATGGAGGGTCAGGTCACCACACTAGGCTTGATTCCCTTCTTTCACATTTATGGCATCACTGGAATATGTTGTGCCACTCTTAAGAGCAAAGGGAAAGTTGTGGTGATGGGAAGGTTTGAGTTGAAAACATTTCTTAATGCCTTGATCACTCATGAGGTCACATTTGCACCCATTGTGCCCCCTATCATTCTCACCTTGGTGAAAAATCCAATAGTGGATGAATTTGACCTCAGAAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCTCCACTTGCACCAGAACTCCTTAATGCTTTTGAACATAAGTTCCCTGGCGTTGCTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACTTATGTACAAAAAGGATTGGGAAGTACTAATAAAAACTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTCCCAAGGAACACACCCGGGGAACTCTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGAGGATGAGACTGCCCAAACCATTGACAAGAATGGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTATTTATCGTTGATCGTATCAAGGAGTTGATTAAGTACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATATTGCTAAGCCATTCATCAGTTGAAGATGCAGCTGTAGTGCCATTACCAGATGAAGAGACAGGGGAAATCCCAGCTGCAAGTGTTATTTTGAGCCCAGGTGCAAAAGAGAGTGAGGAGGACATCATGAACTATGTTGCCTCCAATGCTGCACATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGATGCCATACCAAAGTCACCCTCTGGGAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATGAAGACTAAGTCCTTAACAAAATCTAAGAACATCTAAATCACTAGCAAATATTATGTACTTTGCTTTGATCATTCATGCCTCATCTAGTTAGTCAAGGTTGCACTGTTGTTAAGTGATGACTAATTTGACATGGGACTTATTATTTAACTATTTGTTGAAAGAGATATTTGAAAAATAAAATTTGACGCTTTAGTTTTTATTTTTGTCCCAATTGTCGCCTATTATTACAT
Coding sequences of Glyma08g44190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g44190.1 sequence type=CDS gene model=Glyma08g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAACCTATGTGGAAAATTTCGCAAGTGAGGAGGAACATGTCTTTCGTAGCCAATACTCATCTGTCCCTGTCCCTGACAATGTGACATTGCCGGAATTCGTGCTCCAAAATGCTGAATTGTATGCAGACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGGTTACTTTTAGTGAGGTGGTGAGGGGTGTACACAGGTTTTCAAAGGCCTTAAGATCTCTTGGTCTGAGGAAAGGCCTTGTTGTGATTGTAGTGCTTCCAAATGTGGTAGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGTGCAAATCCAACATCACATGTATCAGAAATTAAGAAGCAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATGTCACAAACTATGAAAAGGTGAAGGCTTTGGAGCTACCTATTATTGTGCTAGGAGATGAAGTTGTTGAAGGTGCCATGAATTGGAACAAGTTGCTTGAAGCAGCAGACCGTGCAGGTGATGATTTGGCAAGGGAGCCTATTCAGCAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTAGTGGCTAATCTTTGCTCTACACTCTTTGGTGTGACCAAAGAAATGGAGGGTCAGGTCACCACACTAGGCTTGATTCCCTTCTTTCACATTTATGGCATCACTGGAATATGTTGTGCCACTCTTAAGAGCAAAGGGAAAGTTGTGGTGATGGGAAGGTTTGAGTTGAAAACATTTCTTAATGCCTTGATCACTCATGAGGTCACATTTGCACCCATTGTGCCCCCTATCATTCTCACCTTGGTGAAAAATCCAATAGTGGATGAATTTGACCTCAGAAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCTCCACTTGCACCAGAACTCCTTAATGCTTTTGAACATAAGTTCCCTGGCGTTGCTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACTTATGTACAAAAAGGATTGGGAAGTACTAATAAAAACTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTCCCAAGGAACACACCCGGGGAACTCTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGAGGATGAGACTGCCCAAACCATTGACAAGAATGGATGGCTTCACACAGGTTGCTCCTGCAGAGTTAGAGGCCATATTGCTAAGCCATTCATCAGTTGA
>Glyma08g44190.2 sequence type=CDS gene model=Glyma08g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAACCTATGTGGAAAATTTCGCAAGTGAGGAGGAACATGTCTTTCGTAGCCAATACTCATCTGTCCCTGTCCCTGACAATGTGACATTGCCGGAATTCGTGCTCCAAAATGCTGAATTGTATGCAGACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGGTTACTTTTAGTGAGGTGGTGAGGGGTGTACACAGGTTTTCAAAGGCCTTAAGATCTCTTGGTCTGAGGAAAGGCCTTGTTGTGATTGTAGTGCTTCCAAATGTGGTAGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGTGCAAATCCAACATCACATGTATCAGAAATTAAGAAGCAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATGTCACAAACTATGAAAAGGTGAAGGCTTTGGAGCTACCTATTATTGTGCTAGGAGATGAAGTTGTTGAAGGTGCCATGAATTGGAACAAGTTGCTTGAAGCAGCAGACCGTGCAGGTGATGATTTGGCAAGGGAGCCTATTCAGCAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTAGTGGCTAATCTTTGCTCTACACTCTTTGGTGTGACCAAAGAAATGGAGGGTCAGGTCACCACACTAGGCTTGATTCCCTTCTTTCACATTTATGGCATCACTGGAATATGTTGTGCCACTCTTAAGAGCAAAGGGAAAGTTGTGGTGATGGGAAGGTTTGAGTTGAAAACATTTCTTAATGCCTTGATCACTCATGAGGTCACATTTGCACCCATTGTGCCCCCTATCATTCTCACCTTGGTGAAAAATCCAATAGTGGATGAATTTGACCTCAGAAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCTCCACTTGCACCAGAACTCCTTAATGCTTTTGAACATAAGTTCCCTGGCGTTGCTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACTTATGTACAAAAAGGATTGGGAAGTACTAATAAAAACTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTCCCAAGGAACACACCCGGGGAACTCTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGAGGATGAGACTGCCCAAACCATTGACAAGAATGGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTATTTATCGTTGATCGTATCAAGGAGTTGATTAAGTACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATATTGCTAAGCCATTCATCAGTTGAAGATGCAGCTGTAGTGCCATTACCAGATGAAGAGACAGGGGAAATCCCAGCTGCAAGTGTTATTTTGAGCCCAGGTGCAAAAGAGAGTGAGGAGGACATCATGAACTATGTTGCCTCCAATGCTGCACATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGATGCCATACCAAAGTCACCCTCTGGGAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATGAAGACTAAGTCCTTAACAAAATCTAAGAACATCTAA
Predicted protein sequences of Glyma08g44190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g44190.1 sequence type=predicted peptide gene model=Glyma08g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTYVENFASEEEHVFRSQYSSVPVPDNVTLPEFVLQNAELYADKVAFVDAVTGKGVTFSEVVRGVHRFSKALRSLGLRKGLVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESADAKLIVTNVTNYEKVKALELPIIVLGDEVVEGAMNWNKLLEAADRAGDDLAREPIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTKEMEGQVTTLGLIPFFHIYGITGICCATLKSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILTLVKNPIVDEFDLRKLKLQAIMTAAAPLAPELLNAFEHKFPGVAVQEAYGLTEHSCITLTYVQKGLGSTNKNSVGFILPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQEDETAQTIDKNGWLHTGCSCRVRGHIAKPFIS*
>Glyma08g44190.2 sequence type=predicted peptide gene model=Glyma08g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTYVENFASEEEHVFRSQYSSVPVPDNVTLPEFVLQNAELYADKVAFVDAVTGKGVTFSEVVRGVHRFSKALRSLGLRKGLVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESADAKLIVTNVTNYEKVKALELPIIVLGDEVVEGAMNWNKLLEAADRAGDDLAREPIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTKEMEGQVTTLGLIPFFHIYGITGICCATLKSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILTLVKNPIVDEFDLRKLKLQAIMTAAAPLAPELLNAFEHKFPGVAVQEAYGLTEHSCITLTYVQKGLGSTNKNSVGFILPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQEDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEETGEIPAASVILSPGAKESEEDIMNYVASNAAHYKKVRVVHFVDAIPKSPSGKIMRRLVKEKMVEKMKTKSLTKSKNI*