Report for Sequence Feature Glyma08g43990
Feature Type: gene_model
Chromosome: Gm08
Start: 43743705
stop: 43749570
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g43990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G55600 AT
Annotation by Michelle Graham. TAIR10: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr5:22522232-22524796 REVERSE LENGTH=663
SoyBase E_val: 0 ISS
GO:0000956 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process
SoyBase N/A ISS
GO:0006487 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
PF01426 PFAM
BAH domain
JGI ISS
PF05641 PFAM
Agenet domain
JGI ISS
UniRef100_B9S9Q9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S9Q9_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002338E17 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338E17 related cluster n=1 Tax=unknown RepID=UPI0002338E17
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g43990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g43990
Paralog Evidence Comments
Glyma18g08850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g43990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g327900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g43990
Coding sequences of Glyma08g43990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g43990.2 sequence type=CDS gene model=Glyma08g43990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTAAACAATTGCTGTTTCGTGGAATGGAAAGAGCAGTTTGTTTCTCAGGAGCGCGGTAATCGTGTGGTTCACTATTACCTGAAGGATTCTGCTGGGGAATCCGTCCTTGCAGTTGTTGGCACTGAGAGGAGTGTTAGGCACATGTGCTATGTTGTTGCTGAGGAGTTTCTTGAAATTTGTGGGATGGAGGGTTCCATTCCAACCGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCGACGCTATCAAAGCAGAACCTGCAGGGAGATAGAAGTGTATCAGCTGGTCATAACTTGGTACCATCTCATGAGGCCACAAATGACAGTGTCAATGAAATTATTGGTCTGTCTGCTCAAATAACAGATGACAAGGACTTTCCAACGAGTAACTCCAAATTGTCCAATTCAGACATTGTTTGGTCAGGAGTTGCGTGGAGATGTGGCAAACAACTTAAGCATTATCCTGCTTTTTTCAGGAATGGCATCAAAATAGCGATTCAATCCTTTGTTTTTGTTATGGGCAAGGGAGAGAACCATTATATTGCTTATGTAGAGGATATGTATGAAGACAGGAGGGGACAGAAAAAGATCAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAGTTCCTGTACGAAATCCTCACCCTCGGGAAGTTTTTATCACACCTTATTCCCAAGTCATTAGTTCAGAGTGCGTAGATGGTTCTGCCACAGTCTTAACTCGTGAAGACTTTGAAAAATGCATGCCTTTTTTTTCCCCCACTTCAAGGGACAGAATACATTTGTGCTTTAGGCAGTTTAGAAGCAACAAAATCAAGCCCTTTGACTTGAGTAAATTGCGTGGTTACTATGCTCAACCAATTCTTTCTTGCTTACACCTTGATTCAATCCAGCACCCTGAGTTCCTAGCAAGAGAAGATGAAGAGTTGAGTGCAGGTGATGATGTGAAAGTAGGAGTCAAGAGGAGGAGGGGTGATAAGGGGTCTCCTCAGTCTTGGATAAGTCGCCAGGGGGTTAGGAAGTTAAGTAGAAATAAGCAAATGATGGTATACAAAACCTTCCAGGTTGCAAATTATGCAAGATCAGAAAGGATATTGCTTTCTCGGAAGCAGGTTGGGAGTCAACCTTGGTCTAACCACAAATACAAGGTTGATGACAAGATAGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTTCAGGTAGCCCGGAAGCAGTTGAAAGTCCAATATGATGATGTCCAGGATGAAGATGGAAGTGGAAATCTTGAGGAATGGATCCCTTCTTTCAAGTTAGCCAGGCCTGATAAACTTGGGATGAGGCATTCTGGCCGCCCCACCATCAGGCCAGCTCCAACTTATGAGGAACAAGAACTAGCTGTTGAGGTTGGAAGTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAACTAGAATTGACAACTGTGGGGATGATAGTGTTGAAGTCCACTTTCCTGGTGAATGCTTGCTGATGAATGTGTGCAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGGGACAGTTGGATTAACATTAAGGCAAAACCTGAAATAACTAAATCTATATTCACAGCTAATAATAGCTTTAACACAAAGCTTTCTGTGTCCCCATCTATTGCTAAAGATGTGGACTCTGTTGGTTTTGCTAATTCATGTCATGGTGATCCTGTTAGTAAGAAGTCAAATGAACCAGTTGTTATCAAAGAAGAGAATTTTGTGTCTTGTGATGGCTCTGATAAAGAAGAGAATTTTGTGTCATGTGATGGCTCTGCTGAAGATGGGGACTGTGTCCAGGATAATAAACCCTCTTCAGAAAAAAGTACTCAAGCTGATAATATTGATACACATATCAATTGTGATAATGAAGAGAATTGTGGTGATAATGATAATGATAACAATAGCAATGATGGTGGTGGTAACAAGAATGATGATGATAATGGCAATAAAGATATGGGGGTATTTGGAACTTCTGGACCGGACCAAGAAACTGTAGAGCTCATGGAAGTGGCTGTATAA
Predicted protein sequences of Glyma08g43990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g43990.2 sequence type=predicted peptide gene model=Glyma08g43990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVNNCCFVEWKEQFVSQERGNRVVHYYLKDSAGESVLAVVGTERSVRHMCYVVAEEFLEICGMEGSIPTGFKWRSRREVVDWLTSTLSKQNLQGDRSVSAGHNLVPSHEATNDSVNEIIGLSAQITDDKDFPTSNSKLSNSDIVWSGVAWRCGKQLKHYPAFFRNGIKIAIQSFVFVMGKGENHYIAYVEDMYEDRRGQKKIKVRWFHHNQEVKGVVPVRNPHPREVFITPYSQVISSECVDGSATVLTREDFEKCMPFFSPTSRDRIHLCFRQFRSNKIKPFDLSKLRGYYAQPILSCLHLDSIQHPEFLAREDEELSAGDDVKVGVKRRRGDKGSPQSWISRQGVRKLSRNKQMMVYKTFQVANYARSERILLSRKQVGSQPWSNHKYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSGNLEEWIPSFKLARPDKLGMRHSGRPTIRPAPTYEEQELAVEVGSAVDAWWSDGWWEGVVTRIDNCGDDSVEVHFPGECLLMNVCKKDLRISRDWLGDSWINIKAKPEITKSIFTANNSFNTKLSVSPSIAKDVDSVGFANSCHGDPVSKKSNEPVVIKEENFVSCDGSDKEENFVSCDGSAEDGDCVQDNKPSSEKSTQADNIDTHINCDNEENCGDNDNDNNSNDGGGNKNDDDNGNKDMGVFGTSGPDQETVELMEVAV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
