Glyma08g43790 - SoyBase

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Report for Sequence Feature Glyma08g43790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43585099
stop:	43590319
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05160	AT	Annotation by Michelle Graham. TAIR10: CCCH-type zinc fingerfamily protein with RNA-binding domain \| chr2:1859011-1860931 REVERSE LENGTH=536	SoyBase	E_val: 6.00E-126	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR24009	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24009:SF14	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J214	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J214_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338E12	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E12 related cluster n=1 Tax=unknown RepID=UPI0002338E12	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43790

Paralog	Evidence	Comments
Glyma18g09015	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g326000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43790

Limit To All Plant Sequences

>Glyma08g43790.2   sequence type=CDS   gene model=Glyma08g43790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTTCGGAGTACACAAGGATTGTTTTTGACAAACTTCATAGATTTGAGCCTGAGAATGCTACAAAGATCATCGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTGCCAGACCATTTAATTCGCGACGTGGCGTACAAGGCGAGAACCGAGCTTCAAAGGTTGGCTTCTAGATCAGCCATTCAGCCAATTTCACTTCCCACCAACTCTCAACAATGTTTAAGCCATTTGTCAGTAATCTCCCCTACTTCGGTAATCACCCCTGGCACTCTTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCCTATTGGGATCCTCAGTCTGCTAGCAATACTAATGCAGAATTCATGGCACTAGGTTATGTGGATTCTATCTCAGAACTTCAAAAGCAGACACCTTTGTTCAGTTTAGAGAATCATATGGATACTATGAACTCCGGAACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTAGTAATTTGGGTGGAAAAAATGGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATAGCTGTAGATATTATCACGAACAAGGCGCCCCAGATATGTTCTCTCACATGTATGGAAATGATATTTTTAATGATGATCAGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAACTTAAAAAAGGAGGTTCCATATCAATTGCTTCCCTTCCAATGGCATACTATGACAGGTACAAAAAAGTGCTGCAGGCAGACGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGCTAAATACATTAGCGCATCGCGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGGTGATGTTTCAAACTACTTTAGTACTTTTGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTAACATTTGATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCCCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGGAAGAACTCTGATAGGATCGAGCATTCTGCTTATTATTCACCACACTATGTAGACATTGACACTGAACCTACCTCAATTCCAAGAAGTTGTAGGAAACCTCGATTTCTGAGGAGGCAGCTCATTAACCAGCAAGAGGAGGCAGCACTTGAATTTCAGAGACAACGTTTTGCAGAGCTGCAACTGGCCCAAAAATCATTGTCCACTTCACCCCATTTAGGCTTCAACATGGACGGGTTAAAAGTTTCGGATGAACATTTCAATGTCCAGTCTGCAGAACCTCACAGTCATGCTCCGAATGACATAGCTGGATATACAGATAACAATTACACTGATGAGGACAGCAATCAAGGTCTGAACCTCCCAGACAGCCCCTTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG

Predicted protein sequences of Glyma08g43790

Limit To All Plant Sequences

>Glyma08g43790.2   sequence type=predicted peptide   gene model=Glyma08g43790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDISEYTRIVFDKLHRFEPENATKIIGYLLLQDHGEQDMVKLASLPDHLIRDVAYKARTELQRLASRSAIQPISLPTNSQQCLSHLSVISPTSVITPGTLTSPASFQVQSPYWDPQSASNTNAEFMALGYVDSISELQKQTPLFSLENHMDTMNSGTAGIANDYYGLDASSASNLGGKNGRFEFPVKTCHYFNKGFCKHGNSCRYYHEQGAPDMFSHMYGNDIFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYAKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLRKNSDRIEHSAYYSPHYVDIDTEPTSIPRSCRKPRFLRRQLINQQEEAALEFQRQRFAELQLAQKSLSTSPHLGFNMDGLKVSDEHFNVQSAEPHSHAPNDIAGYTDNNYTDEDSNQGLNLPDSPFAFPVDSGISAVM*

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