Glyma08g43770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g43770

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43556471
stop:	43562640
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26640	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor family protein \| chr4:13437298-13440693 REVERSE LENGTH=557	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009961	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to 1-Aminocyclopropane-1-carboxylic Acid	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7J209	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=2 Tax=Medicago truncatula RepID=G7J209_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338DDC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338DDC related cluster n=1 Tax=unknown RepID=UPI0002338DDC	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g43770

Locus	Gene Symbol	Protein Name
	WRKY18	WRKY Transcription Factor

Expression Patterns of Glyma08g43770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43770

Paralog	Evidence	Comments
Glyma18g09040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g325800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43770

Limit To All Plant Sequences

>Glyma08g43770.1   sequence type=CDS   gene model=Glyma08g43770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCGGCGAAGCCCTCTCCGACGATCCGAATCGGCCCAATTCCGCCGCCGACGCAGCTCCGGCCCCCGCGGGAGCAAGGTACAAGCTCCTGTCGCCGGCTAAGCTCCCGATCTCCCGCTCCCCGTGCGTCACGATTTCGCCGGGGCTCAGTCCGACGTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGGTCGCTTTCTTTGCTTCATCAAACAGCATATGGTTCCATGACTTCTGCTGCATCTGCTACATTTCCTGTAACCACTGTGTGCTTCAATAGCAATACCGTTGATGAGAGAAAACCTAGCTTCTTTGAGTTTAAACCACACAGTGGATCAAATATGGTTCCCGCAGACTTTGACAACCATGCAAGTGAAAAATCTACTCAAATAGACAGTCAAGGAAAAGCTCAAGCTTTTGATTCATCAGCCTTAGTAAAAAATGAGTCAGCATCCCCTTCAAATGAATTAAGTCTATCATCGCCTGTTCAAATGGATTGCTCAGGAGCTAGTGCCCGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAACAACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAGTGGACTTACCGTTGCAGCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCCCATGATGGACAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGTTACTCTGCAGGAACTATAATGTCTGTGCAAGAAGACAGATCTGATAAAGCTTCTTTGACTAGCCGAGATGACAAAGGATCCAATATGTGTGGCCAGGGGTCTCACCTGGCTGAGCCCGACGGTAAACCAGAGTTATTGCCTGTAGCAACAAATGATGGTGATCTAGATGGTTTGGGGGTTTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGACGTTGGAATTGCTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGTGTTGTTGTACAAACTCTGAGTGAGGTTGATATCTTGGATGATGGCTATCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACGAACACCGGTTGCCCCGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTGATTACCACGTATGAGGGGAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGACCAGCAAGTGCAAGTGGACAGACAAGAGTTAGGCCCGAAGAAAGTGATACCATCAGCCTTGACCTTGGGATGGGAATTAGCCCAGCTGCCGAAAACACATCAAACAGTCAAGGGAGAATGATGCTTTCTGAATTTGGGGATAGTCAAATTCACACCAGCAATTCCAATTTCAAGTTCGTTCATACCACGACCGCGCCGGGGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGTTCTAAAGAAAATCCAAGTGATGGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCTCAGAACATAGGGAGAATACTAATGGGTCCTTGA

Predicted protein sequences of Glyma08g43770

Limit To All Plant Sequences

>Glyma08g43770.1   sequence type=predicted peptide   gene model=Glyma08g43770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAGEALSDDPNRPNSAADAAPAPAGARYKLLSPAKLPISRSPCVTISPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAYGSMTSAASATFPVTTVCFNSNTVDERKPSFFEFKPHSGSNMVPADFDNHASEKSTQIDSQGKAQAFDSSALVKNESASPSNELSLSSPVQMDCSGASARVEGDLDELNPRSNITTGLQASQVDNRGSGLTVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIMSVQEDRSDKASLTSRDDKGSNMCGQGSHLAEPDGKPELLPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKRRKMDVGIADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGPASASGQTRVRPEESDTISLDLGMGISPAAENTSNSQGRMMLSEFGDSQIHTSNSNFKFVHTTTAPGYFGVLNNNSNPYGSKENPSDGPSLNHSAYPCPQNIGRILMGP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain