Glyma08g43760 - SoyBase

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Report for Sequence Feature Glyma08g43760

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43544473
stop:	43547694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16320	AT	Annotation by Michelle Graham. TAIR10: FRIGIDA like 1 \| chr5:5344507-5345919 FORWARD LENGTH=470	SoyBase	E_val: 7.00E-53	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF07899	PFAM	Frigida-like protein	JGI		ISS
UniRef100_G7J207	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABI3-interacting protein n=1 Tax=Medicago truncatula RepID=G7J207_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338DDB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338DDB related cluster n=1 Tax=unknown RepID=UPI0002338DDB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43760

Paralog	Evidence	Comments
Glyma18g09060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g325700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43760

Limit To All Plant Sequences

>Glyma08g43760.2   sequence type=CDS   gene model=Glyma08g43760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACTGAAGACGATCTCAGCAGCACTGAACCTTGTCGATTCCAAGAAAGAGAATCTGAAGAAAGCCTTCGACAATCTGCATTCCCTTCTCTCCCCCCTCCCTCTCTCATGGCTCGACCTCGATTCCCACTTCACCACCCTCCACCACTCCCTCACCCACCGCTTCAACCTCCTCCAATCCCATTCCCAAACCCTAACCCCAATTCCCGACCCACCACCCCACACCCCCCAAGATGTGAACTTTTCGTCAAACCCTACCGACCCATCATCGAATCACGACGAATCATCACCTGGGGTGTCCCTCCAGAACGACGTCGTTCCGGGCCCGGTCACGCCCAGGAACGAATTGGTCGCTTTATGCGAGAAAATGGACGGTGTAGGGTTGATGAATTACGTCAATGACAACTTTCAGGATAGAACCAGGGTTCAGGCGGAGCTTCCCGGCGCGTTTCGGCACGCGCCGGACGCCGGTACGATGGTTCTGGGAGCGTTGGAGGTGTTTCACGGAGAAGGTAGTGAATTGAAGGAATGGGAATTAAGGAGGATTAGGAAGGCTTGCATTGTGCTGTTGAAGCAGTTCAGGGTTGCTGCTCTGAGTGTGAGTGCTGAGGCAAGTGTGAGAGCTAGAGAGTTGGCTTTGGAATGGAAAGAGAGGTTGGTGGGTGATGAGGACAATATGTTTGGAGCTTTGGGGCTTTTGCATTTGATTTGTGCCTTTGGTTTTGTCTCTGAATTCAGCTTGGATGAGCTTGTTGACTTTTCGGTCGCTGCCCCGACTAACGAGGAGGACTTCCCGGAGCTGTGCCGGACGATCGGGTTGACGGAGAGAGTTCCCGATATTGTTCAAAAACTTATAGATAAGGACAAACATATTCCGGCTGTCAAGTATATTCTTGAGTTTAATCTTGCTGACAGGATTTCACCTGTTCCTATTTTGAAAGCTTGTGTAGAAGAAGCTAAGAAACTTGGTAAAAGACTTTTCCAGGAAGGAAAGTCATTGAATGAGAGTACATCTAGAGAAATTAATACACTGAGAATGGTGATCAAGACTATTGAGAGTTATAAGCTTGAATCTGAGTACCCACTTGCTAGCCTGGAGCAGCATATAGAGCAATTAAAGAGGCAGAAGACAAATAATAAACATGCTGCACCGACTTCTGCTGCAAAGCCTCCTCAGCATAAACAGCAACAGCAACAACAGCAGCAAAAGAGAAATATGCAGAAGCAGCCGCAGCAAACTGGGATCAAGCGTCCTCGAGCATCAGCACCAGTTGGATCTGCAGCTGTCCTCAAGAATGTCAATAATGTCAATTCAACTATACACCACTACCAGCAACATCTTGTCCATCCATCAGGTTTGTTTACAGAGCATCCAAATCCATACATGAGCTTGCCAGCCATGCCATTTGGCATGGTGTCTCCTACCCCAAATGTTCCTCCTTATGCAGGTCCTTCAGCTGGGCCTTATGGTCATGATGGTGTCCCAATGGGTCCCAGCGGCAACCCCAGTCTTGGTGGTTCTCATCTTAGCTCGTCAGAGCCACATGTGCAAGCTGTTGGTTATTATGATAGAGCCTCTACTTATGGTGGGATTGGTCTGCAACATTATTACCAAGCATCTTATTATCCTCAATAG

Predicted protein sequences of Glyma08g43760

Limit To All Plant Sequences

>Glyma08g43760.2   sequence type=predicted peptide   gene model=Glyma08g43760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKTISAALNLVDSKKENLKKAFDNLHSLLSPLPLSWLDLDSHFTTLHHSLTHRFNLLQSHSQTLTPIPDPPPHTPQDVNFSSNPTDPSSNHDESSPGVSLQNDVVPGPVTPRNELVALCEKMDGVGLMNYVNDNFQDRTRVQAELPGAFRHAPDAGTMVLGALEVFHGEGSELKEWELRRIRKACIVLLKQFRVAALSVSAEASVRARELALEWKERLVGDEDNMFGALGLLHLICAFGFVSEFSLDELVDFSVAAPTNEEDFPELCRTIGLTERVPDIVQKLIDKDKHIPAVKYILEFNLADRISPVPILKACVEEAKKLGKRLFQEGKSLNESTSREINTLRMVIKTIESYKLESEYPLASLEQHIEQLKRQKTNNKHAAPTSAAKPPQHKQQQQQQQQKRNMQKQPQQTGIKRPRASAPVGSAAVLKNVNNVNSTIHHYQQHLVHPSGLFTEHPNPYMSLPAMPFGMVSPTPNVPPYAGPSAGPYGHDGVPMGPSGNPSLGGSHLSSSEPHVQAVGYYDRASTYGGIGLQHYYQASYYPQ*

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