Glyma08g43750 - SoyBase

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Report for Sequence Feature Glyma08g43750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43531622
stop:	43534200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55560	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:22506477-22507757 REVERSE LENGTH=314	SoyBase	E_val: 2.00E-179	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF37	Panther	PROTEIN KINASE FAMILY PROTEIN	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J1J0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAP kinase-like protein n=1 Tax=Medicago truncatula RepID=G7J1J0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYG5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KYG5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43750

Paralog	Evidence	Comments
Glyma18g09070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g325600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43750

Limit To All Plant Sequences

>Glyma08g43750.1   sequence type=CDS   gene model=Glyma08g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCGAGTGTTAAGCCTGATGCATCTGACAAAGACTCAGAACCATTTGTTGAAGTTGATCCAACAAGAAGATATGGAAGATACAGTGAACTATTAGGATATGGTGCTGTGAAAAAGGTGTATAGGGCATTTGATCAAGAAGAGGGAATAGAGGTGGCATGGAACCAAGTGAAGCTGAGGAACTTCAGTTATGACCCTTCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTAAGAAGCTTGACCAACAAAAACATCATTTCCCTTTACAGTGTTTGGAGGGAGGAGAAACACAACACCTTGAACTTCATCACTGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAAGCATGTGTCCATGAGGGCCTTGAAAAAGTGGTCCAAGCAGATCTTGGAAGGGCTGAATTACTTGCATTTGCATGATCCTTGTATCATCCACAGAGACCTCAACTGCAGTAATGTGTTTGTGAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGCTTGGCAGCAATTGTGGGGAAGAACCACTCTGCACATTCAATTCTTGGGACACCAGAATTCATGGCACCTGAGTTGTATGAAGAGGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGCTAGAGATGGTGACACTAGAGATTCCATATAATGAGTGTGACAGTGTTGCCAAGATATACAAGAAAGTGTCATCAGGTGTGAGGCCACAGGCCTTGAACAAGATCAAAGATGCTGAGGTGAAGGCCTTCGTTGAGAGGTGCCTTGCTCAACCAAGGGCTAGGCCTTCTGCTGCTGAGTTGCTCAAGGACCCCTTCTTTGATGTGCTTGATTGTGACGAAAATGATGATTCTAATGCTTCATGA

Predicted protein sequences of Glyma08g43750

Limit To All Plant Sequences

>Glyma08g43750.1   sequence type=predicted peptide   gene model=Glyma08g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPSVKPDASDKDSEPFVEVDPTRRYGRYSELLGYGAVKKVYRAFDQEEGIEVAWNQVKLRNFSYDPSMVDRLYSEVRLLRSLTNKNIISLYSVWREEKHNTLNFITEVCTSGNLREYRKKHKHVSMRALKKWSKQILEGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSILGTPEFMAPELYEEDYTEMVDIYSFGMCVLEMVTLEIPYNECDSVAKIYKKVSSGVRPQALNKIKDAEVKAFVERCLAQPRARPSAAELLKDPFFDVLDCDENDDSNAS*

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