Glyma08g43710 - SoyBase

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Report for Sequence Feature Glyma08g43710

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43477924
stop:	43484059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20150	AT	Annotation by Michelle Graham. TAIR10: Kinesin motor family protein \| chr3:7031412-7036499 FORWARD LENGTH=1114	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0243	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF202	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF06548	PFAM	Kinesin-related	JGI		ISS
UniRef100_G7J1I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin like protein n=1 Tax=Medicago truncatula RepID=G7J1I5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EE65	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE65 related cluster n=1 Tax=unknown RepID=UPI000233EE65	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43710

Paralog	Evidence	Comments
Glyma18g09120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g325200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43710

Limit To All Plant Sequences

>Glyma08g43710.2   sequence type=CDS   gene model=Glyma08g43710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCAAAAGACCAACAACGCAGGTTCTAGTGGTTTCTTGGGAAGTATATCTTCCAATTTTCTCAGATCCATCTCTTCTTCAAATCGCAAACCCACCTCTTCTTCTTCTTCAAACCCTAAACCACCAAATTCTGACGCTGAAAACACACCCCCTACTACCCATCCAAACATTCCCCTCAATATTCACCACCAATCAAAGCCCAACGACCCATTTTCTCACAGCGACTCACATGTTGTGGTGAGAATTAGGCCTGAAAATAGTAATGGAAAAGAGGGAGATTCGCAAATTAAGAAGGTTTCTTCAGATGCCTTGTGTGCTGGGGACAGAAAGTTCACGTTTGATGAAGTTTTAGATGCCAACTCCAATCAGGAGGATGTTTTTCAGTCAGTGGGTGTTCCCTTGGTTAGAAATGCTTTAGCTGGTTACAACACTACAATTCTGTCATATGGCCAGTCTGGAAGTGGAAAGACTTATACAATGTGGGGTCCCCCAAGTGCCATGGTTGGTGAGTCCTCGCGATCTAGTCAACAGGGAATTGTTCCTCGGATCTTCAGAATGTTATTTTCTGAGCTTGAGAGAGAGAGGCTTGTGTCAGATCAGAAACAGTTCAACTATCAATGCCGTTGTTCATTTCTTGAGATATACAATGAGCGAATTGGGAATTTACTCAATCCTATCCAGGAGAACCTTGAGATGAAGGATGATTCCAGCAATGCACCATATATTGAGAATCTGATTGAGGAATACATCACTAACTATGATGATGTGGCACAAATTCTGGTCAAGGGTCTTTCAAGGAGAAAAAATGGAGCAATGAGCTTAAATTCTAATAGCTCTAGATCACATATAATTTTCACATTTGTCATTGAGTCTTTGTGTAAGGGAACCGCAAAAAGTTTAAGTACCTCAAAGACTAGCCGAATCAGCCTTATTGATCTTGCTGGACTGGATAGGGATGAAGTTGATGATGGAGGTAGCCAATGTCCAAGGGCAAGCGGACATGTAGATAAATCATTATCTCAGCTTGACGACTCCTGTTTAACACGCTTACTACATGGATCACTTGGTGGAAATGCCAAACTCTCGGTGATATGTTCCATCTCCCCTGATAACAAGAGTAATGATGCAACACTGCACACACTCAGATTTGGGGAGCAAGTAAGATCCATTAGAAATGAGCCAGTTATCAATGTACTAAAGGAGGCTGATGTTGATTTGAGTAATAATATCCGACACTTGAAGGAAGAACTTATTAGAGCAAAGGCTGATGTTCATAGCTCAGCTGGGAGTAAAGATGGATACTTCCAAGGACATAATGTGCGGGAAAGCCTGAATCAGATGAGAGTCAGCTTAAACCGCTCTCTTCTCCTATCTAACATAGATAGTGATACCAATGAACATGTAAATGTCAATGAGGATGACATAAGGCAATTACGCCAGCAAATTGATGAATTGGATAATTCATCTGAAGGGAATCCAAAGGATATATCTGTTGATGAAGATTGTGTCCAGTTTTATTCTGATGAGGAAAATTGTGATGCAGACACCATCACCAGTGGTGATGAAGTTAAAAATGCTGAGGTATACTGTGGAGAAACATTGAGCAACCCCTCAAGGGAAACTGAATCTTCACTCAGAGATAGTATTTCAGTCAATTCATGCAATCATTCTCCAACACTTATTGGACCACAGTTGTCTGAGTCTCCAAAATTCAGCAAAACTCAAAGGAAAAGTGTGGCTATTTCGTCAAGTTATCTGGGAAGTTGGAACAATGTGGCTGAGAGTTCAACATTCAGTAACAATGTGTTAAGCAAGCCATATAAACAGGGTGAGCATGTGCAATCCTCATTACAGTCTAGCAAGGCCAAGTCCTTGGCAGCAAGCCTTCAGAAGGGATTACAGATTATTGACTATCACCAGCAGAACTCAGCATTGAGCAAATCTTCAACTTCCTTCTCCTTTGAGCACTTAACTTTGACACCATGTCTAGACATTGACAAGGCTGAATCTTGTGACCAAACAATGCGACAGAAACCTTCCAGTGATGAAGTAACTGCTGCTTTCCTTTGTGCATCTTGCCAGATGAAAATATCAAATCAGGATTCCAGTGAGGTCCAAGCGGGAAATCCTGATGAAGTGACAGATAAAATTCCAAGACATTTGGAGAATGTAATAGCAAAAAGCATCAAGAAAGAGAAGGAGCTGGAGAATGTTTGCAAGGAGCAAGCAGCCAGAATTGAGCAACTAAATCAGTTGGTGGAGAAATTGAAAGGAGAAAAAGAACTGGACTCCATTATTATGTACAACTCAATGAAAGATGAAGAAAAGCTTCTAAGGGGAATTTCCTCAAGTGGTCATTTACCATGTATTATAGAGGAAAAATGTGAAATTAAAGAAATCCAGGAAGAGTTAGCCCAAAGAGGTGTCTCTTTTGATTCAAATGAGAAGGAGTCACTTCTTAAGGAAATTCAGAATCTAAGGAGCAAGCTGCAATTATTTAGTGATGCACAAGTTAAAAAGTCTACAGACAAACTAAGGTCTTCTTTGGTGTCAAGATCCATACAACTGCAAAAAAGCGGTGTATTTTCTTATGAAAATGGCAATGAAGACCTAGATAATGAAAGACAGAGATGGACAGAAATGGAAAGTGAGTGGATTTGTCTTACTGATGAACTTAGAGCTGATCTTGAGTCCTACCGCCAACGTACAGATAGGTTGGAGATGGAACTGAAATTAGAGAAGTCGTCTTCAGTGGAGATGGATGATGCACTAAAGAGAGCTGTTATGGGACATGCTAGAATGGTAGAACACTATGCTGATCTACAAGAAAAATATGATGACTTGGTTACTAAGCATGATGCTATAATGGAAGGGATAGCAGAGGTGAAGAAGGCAGCAGCAAAAGCCTCGAAAAAAGGTCATGCCCGCTTTGCCAAATCTCTTTCTGCTGAGCTTTCTGCATTAAGGGTGGAAAGAGAAAGGGAATCAAAATTATTGAAAAAGGAGAACCAGAGCTTGAAGATTCAACTTCGAGATACTGCTGAAGCTGTACAGGCAGCTGGTGAATTACTTGTTAGACTAAGAGAAGCTGAACATGCAGCAGCTGTTGCAGAGAACTTTGCAAATGTGCAACAAGATAATGAAAATATGAAGATGCAAATTGAGAAGCTGAAAAGAAAACACAAGACAGAGATTAATACCATGAAGCAGTACATTACAGAGAGCAAATTACCCGAATCTGCACTGCAACCACTGTATAAGGAGGATTCTGATGGGGCGCACAATGCAACTTTCTCCTATACATATGATGATCAGGCATGGAGAGCAGAATTTGGAGCAATATATCAGGAGCATTTCTAA

Predicted protein sequences of Glyma08g43710

Limit To All Plant Sequences

>Glyma08g43710.2   sequence type=predicted peptide   gene model=Glyma08g43710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQKTNNAGSSGFLGSISSNFLRSISSSNRKPTSSSSSNPKPPNSDAENTPPTTHPNIPLNIHHQSKPNDPFSHSDSHVVVRIRPENSNGKEGDSQIKKVSSDALCAGDRKFTFDEVLDANSNQEDVFQSVGVPLVRNALAGYNTTILSYGQSGSGKTYTMWGPPSAMVGESSRSSQQGIVPRIFRMLFSELERERLVSDQKQFNYQCRCSFLEIYNERIGNLLNPIQENLEMKDDSSNAPYIENLIEEYITNYDDVAQILVKGLSRRKNGAMSLNSNSSRSHIIFTFVIESLCKGTAKSLSTSKTSRISLIDLAGLDRDEVDDGGSQCPRASGHVDKSLSQLDDSCLTRLLHGSLGGNAKLSVICSISPDNKSNDATLHTLRFGEQVRSIRNEPVINVLKEADVDLSNNIRHLKEELIRAKADVHSSAGSKDGYFQGHNVRESLNQMRVSLNRSLLLSNIDSDTNEHVNVNEDDIRQLRQQIDELDNSSEGNPKDISVDEDCVQFYSDEENCDADTITSGDEVKNAEVYCGETLSNPSRETESSLRDSISVNSCNHSPTLIGPQLSESPKFSKTQRKSVAISSSYLGSWNNVAESSTFSNNVLSKPYKQGEHVQSSLQSSKAKSLAASLQKGLQIIDYHQQNSALSKSSTSFSFEHLTLTPCLDIDKAESCDQTMRQKPSSDEVTAAFLCASCQMKISNQDSSEVQAGNPDEVTDKIPRHLENVIAKSIKKEKELENVCKEQAARIEQLNQLVEKLKGEKELDSIIMYNSMKDEEKLLRGISSSGHLPCIIEEKCEIKEIQEELAQRGVSFDSNEKESLLKEIQNLRSKLQLFSDAQVKKSTDKLRSSLVSRSIQLQKSGVFSYENGNEDLDNERQRWTEMESEWICLTDELRADLESYRQRTDRLEMELKLEKSSSVEMDDALKRAVMGHARMVEHYADLQEKYDDLVTKHDAIMEGIAEVKKAAAKASKKGHARFAKSLSAELSALRVERERESKLLKKENQSLKIQLRDTAEAVQAAGELLVRLREAEHAAAVAENFANVQQDNENMKMQIEKLKRKHKTEINTMKQYITESKLPESALQPLYKEDSDGAHNATFSYTYDDQAWRAEFGAIYQEHF*

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