Glyma08g43700 - SoyBase

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Report for Sequence Feature Glyma08g43700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43472344
stop:	43475611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50575	AT	Annotation by Michelle Graham. TAIR10: Putative lysine decarboxylase family protein \| chr1:18728862-18730296 REVERSE LENGTH=306	SoyBase	E_val: 3.00E-123	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
PF03641	PFAM	Possible lysine decarboxylase	JGI		ISS
UniRef100_B9SSR4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxy-lyase, putative n=1 Tax=Ricinus communis RepID=B9SSR4_RICCO	SoyBase	E_val: 3.00E-142	ISS
UniRef100_I1KYF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYF9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43700

Paralog	Evidence	Comments
Glyma18g09421	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g325100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43700

Limit To All Plant Sequences

>Glyma08g43700.1   sequence type=CDS   gene model=Glyma08g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTCAGTGGCAGCTTCGTTGGGTACCTATGTTGTGCTGAGAGACACTCATGAAACAAGAATCAAGTGCCAATTTTTGTGCAGAAAAGAACAGAATAGTAGAATTGGTTTCAAGTTTTCAAAGCACAAGGCCATTCAAAGTGCAATTTTTTTTAGCAAGCATGAGTTCACTGATTTGGATGAGAGGAAGAGCTCAGATGAGGTTAAAGAAGAGATTAAAAAATGTTATGAACTCATAAACAGATTAGGGAGAGGAGTTGTGTATCTGGGTTCTTCAAGGATGGGACCTAGCCATTCACATTATGTGCAAGCACAAGAGCTGGCTAAAGAGATAGCAAATCTTTTGGACTGCACTTCTTGGTCAGGGGCTGGACCAGGGCTAATGGACGCTGTTACTCAAGGTTCTATGCTAGCAGGAAAACCAGTTGGTGGATTCAAGATAGGAAGAGAAGCTGGGGAATGGACTGCGTCTAACTTTCATCCATACTTACCGTCAGAAAATTATCTCACCTTCCGGTTTTTCTCAGCAAGGAAGCATGGGCTAGTGGACGCTGTAGTGAGGAACAATTCGTTTGATAAAACTGCTGTTGTTGCCCTTCCTGGTGGGATTGGTACTTTAGATGAGGTGTTTGAGATATTGGCATTGATTCAGCTAGAACGGATTGGATCAAAGTTTCCTGTTCCCTTCCTGTTGATGAACTATGATTCATTTTATTCAAAGCTGCTTGAATTTTTAAATGATTGTGAGGGTTGGGGAACTGTCTCTAAAGGAGAGGTTGCATCATTGTGGAAGGTTTGTAACAGCAACTCAGAAGCTTTGGCATACCTAGAAGAATTCTATGGCATTTCTTCTAGTGACAAAAGTAAGAATGTAACTAAACTGTATAGCACGTATGAATCACCGTCCTCATAA

Predicted protein sequences of Glyma08g43700

Limit To All Plant Sequences

>Glyma08g43700.1   sequence type=predicted peptide   gene model=Glyma08g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSVAASLGTYVVLRDTHETRIKCQFLCRKEQNSRIGFKFSKHKAIQSAIFFSKHEFTDLDERKSSDEVKEEIKKCYELINRLGRGVVYLGSSRMGPSHSHYVQAQELAKEIANLLDCTSWSGAGPGLMDAVTQGSMLAGKPVGGFKIGREAGEWTASNFHPYLPSENYLTFRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDEVFEILALIQLERIGSKFPVPFLLMNYDSFYSKLLEFLNDCEGWGTVSKGEVASLWKVCNSNSEALAYLEEFYGISSSDKSKNVTKLYSTYESPSS*

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