Glyma08g43630 - SoyBase

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Report for Sequence Feature Glyma08g43630

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43409257
stop:	43415448
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26690	AT	Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterase family protein \| chr4:13456793-13459890 REVERSE LENGTH=759	SoyBase	E_val: 0	ISS
GO:0006071	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol metabolic process	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010026	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome differentiation	SoyBase	N/A	ISS
GO:0010053	GO-bp	Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation	SoyBase	N/A	ISS
GO:0010442	GO-bp	Annotation by Michelle Graham. GO Biological Process: guard cell morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
GO:0008889	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerophosphodiester phosphodiesterase activity	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG2258	KOG	Glycerophosphoryl diester phosphodiesterase	JGI		ISS
PTHR23344	Panther	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	JGI		ISS
PF03009	PFAM	Glycerophosphoryl diester phosphodiesterase family	JGI		ISS
UniRef100_G7J1F5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycerophosphodiesterase-like protein n=1 Tax=Medicago truncatula RepID=G7J1F5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KYF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KYF1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43630 not represented in the dataset	Glyma08g43630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43630

Paralog	Evidence	Comments
Glyma18g09533	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g324300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43630

Limit To All Plant Sequences

>Glyma08g43630.1   sequence type=CDS   gene model=Glyma08g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCTCTCGTGTACTTGCTATACTCATTCTTCAGTACTCATTGGTAGCACTGGTTTCTTCAGCTGGACCACCAAGTGGCTGGAAAACATTGCAAGGATCTCCACCAATGGTCATAGCACGTGGTGGGTTTTCAGGGATATTTCCAGATTCAAGTTCACTTGCCTATGGTTTGGCACTTGATACTTGTGGTCCAAATGTGACTCTATGGTGTGATGTGCAATTGACAAAGGATGGAGTTGGGATCTGTTTCCCAGAGCTCAAGCTAGACAATGCCACTGACATTTCCATTGCTTACCCAGGCAAGGCAAAGGATTACTTAGTTAATGGGGTCTCAACCCGGGGATGGTTTTCAGTGGATTACAACTTTGGTGAACTAGCAAATGTCTCTGTTGTCCAGGGAGTGTACTCTCGGACTAATAAGTTTGATGGCAACAAGCTTCCCATTCTCACTGTTGAACAAGTAGCTAAATTAATAAAATCACCATCTACAGGCCTGTGGTTAAATTTTCAGCATGCTTCATTCTTCAAGCAACAGAATTTGAGTGTAGAAAATTTTCTTCAATCTCTCCCTGGTAGAAGTGTACCGGTCAATTACATCTCATCACCTGATGTGGACTTCTTAAGAAGAGTAAAATCAAGCTTTAGTTCTGGACCAACTAGCTTCATCTTCAGGATTCTGGAGCAGTCTAAGATTGAACCTACAACCAATCAGACATATGGTGAACTCTTGAAAAATCTCGCACTTATCAAGACATTTTCTTCAGGAATTCTTGTTCCCAAGGGCTATATATGGCCTGTAGACTCAGATCATTATCTACAACCACATACCCCTCTTGTCACAGATGCTCATAGAGAAGGGCTGCAAGTTTTTGTATCAGACCTTACTAATGATGTTCCATTTAGCTACAATTTCAGCTATGATCCTCTGGCTGAGTGTCTATCTTTCATCGACGGTGATGATTTTTCTGTTGATGGTGTGCTGTCAGACTTCCCAGTAACTCCATCTGCAGCCATAAATTGCTTTTCTGGTCTAGGGGAAAATGCAAAAAGACAAGTGGACACTTTGGTTATCACAAAATATGGAGCAAGTGGAGACAATCCTGCGTGTACTGACCTTGCATACAACCAAGCTAAATCAGATGGGGCAGATGTACTTGACTGTCCTGTTCAAATGTCCAAGGATGGAATACCCTTTTGCTTAAGCTCTATTGATTTATTAGAGAGCACAACAGTTGCTGATACACAATTCAAAAACCGTGCAACAACTATTCTGGAGATTAAATTTCGCAGTGGCATATATACATTCAGCTTGACATGGGATGAGATAAAAACATTGACACCCTCAATATTGAACCCTTATGAGAAATACATATTGTCCCGGAATCCAAAATCCAAAAATCTAGGAAAACTTATAACCTTGTCTGACTTTTTGTCCTTGAACGAAGGCTCTCACATCTTGATCAGCATAGAGAATGCTGCCTATCTTGCTGAGAAGCAGAATTTACATGTGACCGATGCAGTCCTTGATGCATTACAAAAAGCAAAACCAAGATCACATAAAGTTATGATTCAGTCAACTCATAGCTCTGTGCTGAAGATATTCAAAGATAAATCCAAATTTGAAAGGGTTTACAAGGTTGATGAGAACATTCGCGACGCGGCTGACTCAGCCATTGAGGACATCAAAACATTTGCTGATTCTGTGGTTATAGGAAAGGCATCTGTTTTTCCTGAAAGTTCAGCCTTTCTAGTTAACTCTACAAACACTGTGGCAAGGCTAAAATCATTTAAGCTCCCAGTTTATGTAGAAACTTTTAGCAATGAATTTGTATCACAAGCATGGGACTACTACTCAGATCCATCCATTGAGATAAATTCATTTGTCATTGGAACCAAGGTTAATGGCATTATTACTGACTTCCCAAAGACAGCAAATAGATATAGAAGGAACTTGTGTTTAAAGAATGGCAACAAAGAACCTTACAGGAGCCCTATTGAACCTGGCAAACTTTTTAAACAAATTTCTAACTTGTACCTTCCACCACTTCCCCCTCCACTCCCAGTCTTGACTGATAGTAATGTGACAGAGGCACCTTTGCCTGGTGTCTCTGGAAAAGTTCCATCTAGCAAAGCTGCTCCTGGAGTAGGAGCAGCAGCTCCAGCCCCCATCACAGCATAA

Predicted protein sequences of Glyma08g43630

Limit To All Plant Sequences

>Glyma08g43630.1   sequence type=predicted peptide   gene model=Glyma08g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLSRVLAILILQYSLVALVSSAGPPSGWKTLQGSPPMVIARGGFSGIFPDSSSLAYGLALDTCGPNVTLWCDVQLTKDGVGICFPELKLDNATDISIAYPGKAKDYLVNGVSTRGWFSVDYNFGELANVSVVQGVYSRTNKFDGNKLPILTVEQVAKLIKSPSTGLWLNFQHASFFKQQNLSVENFLQSLPGRSVPVNYISSPDVDFLRRVKSSFSSGPTSFIFRILEQSKIEPTTNQTYGELLKNLALIKTFSSGILVPKGYIWPVDSDHYLQPHTPLVTDAHREGLQVFVSDLTNDVPFSYNFSYDPLAECLSFIDGDDFSVDGVLSDFPVTPSAAINCFSGLGENAKRQVDTLVITKYGASGDNPACTDLAYNQAKSDGADVLDCPVQMSKDGIPFCLSSIDLLESTTVADTQFKNRATTILEIKFRSGIYTFSLTWDEIKTLTPSILNPYEKYILSRNPKSKNLGKLITLSDFLSLNEGSHILISIENAAYLAEKQNLHVTDAVLDALQKAKPRSHKVMIQSTHSSVLKIFKDKSKFERVYKVDENIRDAADSAIEDIKTFADSVVIGKASVFPESSAFLVNSTNTVARLKSFKLPVYVETFSNEFVSQAWDYYSDPSIEINSFVIGTKVNGIITDFPKTANRYRRNLCLKNGNKEPYRSPIEPGKLFKQISNLYLPPLPPPLPVLTDSNVTEAPLPGVSGKVPSSKAAPGVGAAAPAPITA*

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