Glyma08g43620 - SoyBase

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Report for Sequence Feature Glyma08g43620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43400069
stop:	43406082
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55470	AT	Annotation by Michelle Graham. TAIR10: Na+/H+ (sodium hydrogen) exchanger 3 \| chr5:22469553-22472585 REVERSE LENGTH=529	SoyBase	E_val: 0	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055075	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0015081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
KOG1965	KOG	Sodium/hydrogen exchanger protein	JGI		ISS
PTHR10110	Panther	SODIUM/HYDROGEN EXCHANGER	JGI		ISS
PTHR10110:SF20	Panther	SODIUM/HYDROGEN EXCHANGER	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_G7J1F4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Sodium/hydrogen exchanger n=1 Tax=Medicago truncatula RepID=G7J1F4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7J1F4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sodium/hydrogen exchanger n=1 Tax=Medicago truncatula RepID=G7J1F4_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43620 not represented in the dataset	Glyma08g43620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g324200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g43620

Limit To All Plant Sequences

>Glyma08g43620.2   sequence type=transcript   gene model=Glyma08g43620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATACATTTATTAAAGTTAGAACCGAAAACAACAACCTTTGAGTTCGTGATTCTCTGACCTTTGATTTTAATCAACAAAGTTATCTTGATAGCTTTTATTGATATTGTTATAAATATAAGGTAGTGAGGAATTTGGTGGTATGAACGTAACCATTATTACTATAATTTGATTAATATATGGGTATGGTGCCAGTGAATTTGATTCCTGAGGTATTGAGGAATTTGGTTCATGAGCACGCACTAGTGGTGCCCATATCACTCTTTGTAGCGGTTCTCTGCCTCTGCTTGGTCGTTGGTCACTTGCTTGAAGAAAATCGATGGATTAATGAATCCATTCTTGCCATTATAGTAGGATTCATTGCTGGAATTATACTGTTATTAGTCACCAAAGGGAAGAGTTCTCACATCCTTACATTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTCTTCCATAACTTCTTAACCATCATGCTGTTTGGGGTGATCGGTGTTTTTATTTCAGTGTCGATTATTACATGCGGCAGCTGGTGGTTGTTCCCCAAGTTGAAGTTGCTTGGCCTATCTGGGCAAGATTATCTCGCTATAGGAACAATTTTCTCGTCAACGGACACGGTTTGCACACTGCAGGTTCTCCATCAAGATGAAACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAGATTAAGTGGCAAGACGTTCAGTGTTATTGGAGAATTCTTGTATCTATTTATAACAAGCACTGGTCTTGGAGTTATAACTGGCCTTCTCACAGCATATATCTTGAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTTCCTTGATGATCTTAATGGCATACCTATCCTACATGTTGGCAGAGCTATTCGATCTAAGTGGAATCCTCACCGTTTTCTTTTGTGGAATACTAATGTCACATTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTTCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACCCAATTAAGTTATGGAAATTTGATGGGGATATACAGTTCCTTAATCCTATTGATATTGCTTGGGCGGGCAGCATTTGTTTTCCCTCTCTCTGCTCTGGCCAATTATACGAACACACGTGCTACTTCTGACCAAGCCTCAAGTATCACATTCAAACATCAGATAATCATTTGGTGGGCTGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACGTTTTCTGGAGTTACTACTGATCCAGTTAATGCAACAATGATTACCAACACCATTATTGTTGTCCTATTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCACTAATTAGATATCTGCTTCCCCACAGTGCAACAAGGAAAAGCATCAGCCATTCAGAATCAGGTCCACCATTTGACGACTTGAATCTTCCTTTCCTATCCCTTGAGGAGTCAGCAGCGACCAACATCAGCCGCGCAAAGGCAAGTTTGTCCATGTTGATAGAAAGTCCTGTGTTCACCATACATCGCTATTGGAGGAGGTTCGATGATGCCTACATGAGACCTATATTTGGGGGACCTCACGGTAACCAGTCACAGTGCTAGCAATATAGCAAATCATGGATATCTCAGTGATGTGCTTAACTGTTGGAACACAAATGATGATCCATTTCAATCCAATATTGAAGATGAGTAGCTTCCATGAAGATTCATTGCCACTGTTTGTGATGCTTAGGTGAGGATTATAGTAAGTAATAAGGGACCAGCTGTCTTTGGAATATCACACAGAAGTGTGAACTTACTTGAAGCTTTAAAGAAGCTCATAGTTGGTTGAGCAGCGGTGCTTGAGTTATTGGAAACCCCCTAACACTGTCTTCAATTCCTACCAATAAAAAAAAGTGCAGATTTTCCTTTGTTCATGAATGTTGGGGCGAATAATTGAGAATTACTCTTCAATTTAACGAATTTGTGACTCTCGAATATCAAACTGATTTATTTATTTTTTATACCTTATTCTATCAATATTGAGTTAATGCATCCAATTGATTA

Coding sequences of Glyma08g43620

Limit To All Plant Sequences

>Glyma08g43620.1   sequence type=CDS   gene model=Glyma08g43620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCTGGTGGTTGTTCCCCAAGTTGAAGTTGCTTGGCCTATCTGGGCAAGATTATCTCGCTATAGGAACAATTTTCTCGTCAACGGACACGGTTTGCACACTGCAGGTTCTCCATCAAGATGAAACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAGATTAAGTGGCAAGACGTTCAGTGTTATTGGAGAATTCTTGTATCTATTTATAACAAGCACTGGTCTTGGAGTTATAACTGGCCTTCTCACAGCATATATCTTGAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTTCCTTGATGATCTTAATGGCATACCTATCCTACATGTTGGCAGAGCTATTCGATCTAAGTGGAATCCTCACCGTTTTCTTTTGTGGAATACTAATGTCACATTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTTCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACCCAATTAAGTTATGGAAATTTGATGGGGATATACAGTTCCTTAATCCTATTGATATTGCTTGGGCGGGCAGCATTTGTTTTCCCTCTCTCTGCTCTGGCCAATTATACGAACACACGTGCTACTTCTGACCAAGCCTCAAGTATCACATTCAAACATCAGATAATCATTTGGTGGGCTGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACGTTTTCTGGAGTTACTACTGATCCAGTTAATGCAACAATGATTACCAACACCATTATTGTTGTCCTATTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCACTAATTAGATATCTGCTTCCCCACAGTGCAACAAGGAAAAGCATCAGCCATTCAGAATCAGGTCCACCATTTGACGACTTGAATCTTCCTTTCCTATCCCTTGAGGAGTCAGCAGCGACCAACATCAGCCGCGCAAAGGCAAGTTTGTCCATGTTGATAGAAAGTCCTGTGTTCACCATACATCGCTATTGGAGGAGGTTCGATGATGCCTACATGAGACCTATATTTGGGGGACCTCACGGTAACCAGTCACAGTGCTAG

>Glyma08g43620.2   sequence type=CDS   gene model=Glyma08g43620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATGGTGCCAGTGAATTTGATTCCTGAGGTATTGAGGAATTTGGTTCATGAGCACGCACTAGTGGTGCCCATATCACTCTTTGTAGCGGTTCTCTGCCTCTGCTTGGTCGTTGGTCACTTGCTTGAAGAAAATCGATGGATTAATGAATCCATTCTTGCCATTATAGTAGGATTCATTGCTGGAATTATACTGTTATTAGTCACCAAAGGGAAGAGTTCTCACATCCTTACATTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTCTTCCATAACTTCTTAACCATCATGCTGTTTGGGGTGATCGGTGTTTTTATTTCAGTGTCGATTATTACATGCGGCAGCTGGTGGTTGTTCCCCAAGTTGAAGTTGCTTGGCCTATCTGGGCAAGATTATCTCGCTATAGGAACAATTTTCTCGTCAACGGACACGGTTTGCACACTGCAGGTTCTCCATCAAGATGAAACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAGATTAAGTGGCAAGACGTTCAGTGTTATTGGAGAATTCTTGTATCTATTTATAACAAGCACTGGTCTTGGAGTTATAACTGGCCTTCTCACAGCATATATCTTGAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTTCCTTGATGATCTTAATGGCATACCTATCCTACATGTTGGCAGAGCTATTCGATCTAAGTGGAATCCTCACCGTTTTCTTTTGTGGAATACTAATGTCACATTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTTCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACCCAATTAAGTTATGGAAATTTGATGGGGATATACAGTTCCTTAATCCTATTGATATTGCTTGGGCGGGCAGCATTTGTTTTCCCTCTCTCTGCTCTGGCCAATTATACGAACACACGTGCTACTTCTGACCAAGCCTCAAGTATCACATTCAAACATCAGATAATCATTTGGTGGGCTGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACGTTTTCTGGAGTTACTACTGATCCAGTTAATGCAACAATGATTACCAACACCATTATTGTTGTCCTATTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCACTAATTAGATATCTGCTTCCCCACAGTGCAACAAGGAAAAGCATCAGCCATTCAGAATCAGGTCCACCATTTGACGACTTGAATCTTCCTTTCCTATCCCTTGAGGAGTCAGCAGCGACCAACATCAGCCGCGCAAAGGCAAGTTTGTCCATGTTGATAGAAAGTCCTGTGTTCACCATACATCGCTATTGGAGGAGGTTCGATGATGCCTACATGAGACCTATATTTGGGGGACCTCACGGTAACCAGTCACAGTGCTAG

Predicted protein sequences of Glyma08g43620

Limit To All Plant Sequences

>Glyma08g43620.1   sequence type=predicted peptide   gene model=Glyma08g43620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWWLFPKLKLLGLSGQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLSGKTFSVIGEFLYLFITSTGLGVITGLLTAYILKALSFGRHSSVREISLMILMAYLSYMLAELFDLSGILTVFFCGILMSHYAWYNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTQLSYGNLMGIYSSLILLILLGRAAFVFPLSALANYTNTRATSDQASSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTTDPVNATMITNTIIVVLFSTLVFGFLTKPLIRYLLPHSATRKSISHSESGPPFDDLNLPFLSLEESAATNISRAKASLSMLIESPVFTIHRYWRRFDDAYMRPIFGGPHGNQSQC*

>Glyma08g43620.2   sequence type=predicted peptide   gene model=Glyma08g43620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMVPVNLIPEVLRNLVHEHALVVPISLFVAVLCLCLVVGHLLEENRWINESILAIIVGFIAGIILLLVTKGKSSHILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISVSIITCGSWWLFPKLKLLGLSGQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLSGKTFSVIGEFLYLFITSTGLGVITGLLTAYILKALSFGRHSSVREISLMILMAYLSYMLAELFDLSGILTVFFCGILMSHYAWYNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTQLSYGNLMGIYSSLILLILLGRAAFVFPLSALANYTNTRATSDQASSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTTDPVNATMITNTIIVVLFSTLVFGFLTKPLIRYLLPHSATRKSISHSESGPPFDDLNLPFLSLEESAATNISRAKASLSMLIESPVFTIHRYWRRFDDAYMRPIFGGPHGNQSQC*

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