Glyma08g43590 - SoyBase

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Report for Sequence Feature Glyma08g43590

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43386765
stop:	43391146
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22360	AT	Annotation by Michelle Graham. TAIR10: SWIB complex BAF60b domain-containing protein \| chr4:11807811-11809660 FORWARD LENGTH=385	SoyBase	E_val: 9.00E-86	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13844	Panther	BRG-1 ASSOCIATED FACTOR 60 (BAF60)	JGI		ISS
PF02201	PFAM	SWIB/MDM2 domain	JGI		ISS
PF08766	PFAM	DEK C terminal domain	JGI		ISS
UniRef100_G7J046	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Upstream activation factor subunit UAF30 n=1 Tax=Medicago truncatula RepID=G7J046_MEDTR	SoyBase	E_val: 5.00E-152	ISS
UniRef100_I1KYE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KYE8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g324000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g43590

Limit To All Plant Sequences

>Glyma08g43590.2   sequence type=transcript   gene model=Glyma08g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATTGTCCGTTTCAATCCAAAACGAAGCTCAGGAGAGAGAAAGAGAGTTATATAGAGAGAGAAAGAGAAAAAACCAATATCACTATGGCGTAGAGAGAGAGAGAGAGAGAGAGAGAAAACAACAACAAACCTCATCACCACACAGAGTAGTAGAGAGAGAGAGAAAAAAAAAAAGAGAGTCCGTTAGTTAATTTCAGTTTATTTATTTTATATTTTTAAAAAGAAGAGAAAAAGCAATGGTGACAGAGGAAGAAATATCTGAAGCGGTTCAGTCTCTGCTGCGGGAATCAAACCCTAGTAGATTCACGACGCTAAACCAGGTGGTGGAGGAGCTCCAGGCCAAGCTCGGCCACGACCTCACTCACAAAATCGATTTCATCACCGCGCAGATCAACCTCCTCTTCGGATCCCGACAACCGCCGCAAAACCCGCATAGGCAGTTACAACAGCCTAAGGACCATTTTGCCCCTCCGCCAAACCCTAATTTTCACTCTGCCCCTGTCAGTGTTGGCTTTCAGTTGCAGAATTTCTCTTCTTCTAACGCTGTTGTCGCTGCTGCTACTGCTGCTGATGCTTCGCGCATTGAAGCTCCTTCCGCTCCTGTTGTTGTTGAAGGCAACCAGGTTCCCAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAAGTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTTGCTAACTTTTTCGGCATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGATGCTGACAGCATTCTATGTTTGTAATCATGAGAGAAGGTAGAAAACCTTTATTTCCATTGGACAAGACTTTGGACACCTGTTCGGATGATCCTCTTCATGCTTGAAAGTTGAAACTATTTTTCTTTTCTTTTTCCCTGTCATAGGAGCAATAAATATACCTTATTAAATCCTCTTAATTACTTCAAAAAATAAATGTTAAATGACTTCTTTCTTCTAATATGATAAATGCT

Coding sequences of Glyma08g43590

Limit To All Plant Sequences

>Glyma08g43590.1   sequence type=CDS   gene model=Glyma08g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACAGAGGAAGAAATATCTGAAGCGGTTCAGTCTCTGCTGCGGGAATCAAACCCTAGTAGATTCACGACGCTAAACCAGGTGGTGGAGGAGCTCCAGGCCAAGCTCGGCCACGACCTCACTCACAAAATCGATTTCATCACCGCGCAGATCAACCTCCTCTTCGGATCCCGACAACCGCCGCAAAACCCGCATAGGCAGTTACAACAGCCTAAGGACCATTTTGCCCCTCCGCCAAACCCTAATTTTCACTCTGCCCCTGTCAGTGTTGGCTTTCAGTTGCAGAATTTCTCTTCTTCTAACGCTGTTGTCGCTGCTGCTACTGCTGCTGATGCTTCGCGCATTGAAGCTCCTTCCGCTCCTGTTGTTGTTGAAGGCAACCAGGTTCCCAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAAGTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTTGCTAACTTTTTCGGCATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA

>Glyma08g43590.2   sequence type=CDS   gene model=Glyma08g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACAGAGGAAGAAATATCTGAAGCGGTTCAGTCTCTGCTGCGGGAATCAAACCCTAGTAGATTCACGACGCTAAACCAGGTGGTGGAGGAGCTCCAGGCCAAGCTCGGCCACGACCTCACTCACAAAATCGATTTCATCACCGCGCAGATCAACCTCCTCTTCGGATCCCGACAACCGCCGCAAAACCCGCATAGGCAGTTACAACAGCCTAAGGACCATTTTGCCCCTCCGCCAAACCCTAATTTTCACTCTGCCCCTGTCAGTGTTGGCTTTCAGTTGCAGAATTTCTCTTCTTCTAACGCTGTTGTCGCTGCTGCTACTGCTGCTGATGCTTCGCGCATTGAAGCTCCTTCCGCTCCTGTTGTTGTTGAAGGCAACCAGGTTCCCAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAGAAACAGAAGGTAGATGTGGAGTCAGGAACAAGAAGTGCTGAACCTACTCCTTCTGTAATAATATCTGATGCACTTGCTAACTTTTTCGGCATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA

Predicted protein sequences of Glyma08g43590

Limit To All Plant Sequences

>Glyma08g43590.1   sequence type=predicted peptide   gene model=Glyma08g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTEEEISEAVQSLLRESNPSRFTTLNQVVEELQAKLGHDLTHKIDFITAQINLLFGSRQPPQNPHRQLQQPKDHFAPPPNPNFHSAPVSVGFQLQNFSSSNAVVAAATAADASRIEAPSAPVVVEGNQVPKESTQTKVKRRGGPGGLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLSKHIIPLEPTKKPVPKKQKVDVESGTRSAEPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPANPMAIVCDGKLQEIFGCESISALGIPEVLGRHHIFRSS*

>Glyma08g43590.2   sequence type=predicted peptide   gene model=Glyma08g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTEEEISEAVQSLLRESNPSRFTTLNQVVEELQAKLGHDLTHKIDFITAQINLLFGSRQPPQNPHRQLQQPKDHFAPPPNPNFHSAPVSVGFQLQNFSSSNAVVAAATAADASRIEAPSAPVVVEGNQVPKESTQTKVKRRGGPGGLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLSKHIIPLEPTKKPVPKKQKVDVESGTRSAEPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPANPMAIVCDGKLQEIFGCESISALGIPEVLGRHHIFRSS*

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