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Report for Sequence Feature Glyma08g43576

Feature Type:gene_model
Chromosome:Gm08
Start:43370776
stop:43372351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g43576
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55390AT Annotation by Michelle Graham. TAIR10: ENHANCED DOWNY MILDEW 2 | chr5:22448152-22454414 REVERSE LENGTH=1297 SoyBaseE_val: 2.00E-45ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR13863Panther TRANSCRIPTION INTERMEDIARY FACTOR 1 JGI ISS
PTHR13863:SF5Panther TRANSCRIPTIONAL INTERMEDIARY FACTOR 1 GAMMA JGI ISS
UniRef100_B9SSQ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSQ5_RICCO SoyBaseE_val: 4.00E-59ISS
UniRef100_UPI000233EFCDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EFCD related cluster n=1 Tax=unknown RepID=UPI000233EFCD SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g43576
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43576 not represented in the dataset
Glyma08g43576 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43576 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g323700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g43576
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g43576
>Glyma08g43576.1   sequence type=CDS   gene model=Glyma08g43576   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTCTTTCTTGTCTGTCTCACCATAATTACAAAGGAGTTGCCTGCAGGGTCACAGTTGATCATGGGCCTCAAACCCCCCCCCCCCTTTGGACTTAAGGCAGCTTTGGCTAACAAGTTTATAGATAAACCTCTCACGTTTAGACCGAAGCTCCTGATTCTCACAGTACCACCAGAAACGGAGAGGCTAGATGAAAAACGGTCGCCTTATGATCTTGTCTGGGACGATAAGAGTTTTCTATTGGGAAAGTCATTTTATCTACTGGGATCAGTTGATGCAAACGACAGGCAGATAGAGCAGTGGAATGTAAAGCCACCCCCACTCTACCTTTGGAGTCGTCCTGATTGGACTGATAAGCACAAGGTCATAGCTCAGGAGCATGGTCACTTTATCAGCCAGCGGGAGCTGTCAAGAATCAAAAGCTTTGATAAAGAAAAATCACCGGCCAGTCATACTATGGATGATAGTTATGGTTTTGATATCATGCCAGGTCACAATATCTTGAATTCAACTGATGCACCTAAGGATGAGGGCCAGACAGGATGCTCACCACATGGAAATGTTGATCGAGAGAGTCAAGAGAGACTGGAATATAGGGTGAGAAAGGCTGATAAGACCTCATGGAAGAGGAAACGAACTGAGGAAAACGATGGAAGATTAGATTATGACCTTGGTGATAAAAGTTATAGGCATATGGAGCCCACCTCTTCCTCACGTATGGGGGAGATTAGAGCAGCCTATAGCAGGACCCAAAACTGGCCCAGTTTTGCCAATCCCCTTTATGATTCTGGGATTACAGATGTAGGCGAACACCGTAGCAGCCTTCCGAGAGACACTGCCCATAGCTTCAAATATAGACCCTATGCCAAGGAGGATGAGAACTATCTTAAGGAATTAGACACTAGGCAACAGACTCGCCATTATGGTATTCAGAATCCTAATTCTGTGACAAGCAACTATCTATCTGGTAGCCATCATCACATGGGGCCAAGTTATCCAGCCTGTGGTTTGGCATCTGAGTCTCCTTATGTGATGAATACACCAGCCATGCAGCGATATGCACCTCGCCCGGACGAATTAAACCATGCAAGGATGGATCCTTTGGGGTCTTAA
Predicted protein sequences of Glyma08g43576
>Glyma08g43576.1   sequence type=predicted peptide   gene model=Glyma08g43576   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFFLVCLTIITKELPAGSQLIMGLKPPPPFGLKAALANKFIDKPLTFRPKLLILTVPPETERLDEKRSPYDLVWDDKSFLLGKSFYLLGSVDANDRQIEQWNVKPPPLYLWSRPDWTDKHKVIAQEHGHFISQRELSRIKSFDKEKSPASHTMDDSYGFDIMPGHNILNSTDAPKDEGQTGCSPHGNVDRESQERLEYRVRKADKTSWKRKRTEENDGRLDYDLGDKSYRHMEPTSSSRMGEIRAAYSRTQNWPSFANPLYDSGITDVGEHRSSLPRDTAHSFKYRPYAKEDENYLKELDTRQQTRHYGIQNPNSVTSNYLSGSHHHMGPSYPACGLASESPYVMNTPAMQRYAPRPDELNHARMDPLGS*






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