Glyma08g43515 - SoyBase

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Report for Sequence Feature Glyma08g43515

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43316323
stop:	43318669
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43515

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55510	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein \| chr5:22486525-22487916 REVERSE LENGTH=214	SoyBase	E_val: 1.00E-51	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005744	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG3225	KOG	Mitochondrial import inner membrane translocase, subunit TIM22	JGI		ISS
PTHR14110	Panther	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE TIM22	JGI		ISS
PF02466	PFAM	Tim17/Tim22/Tim23 family	JGI		ISS
UniRef100_G7K4C7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Medicago truncatula RepID=G7K4C7_MEDTR	SoyBase	E_val: 1.00E-51	ISS
UniRef100_UPI000233EFD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFD8 related cluster n=1 Tax=unknown RepID=UPI000233EFD8	SoyBase	E_val: 2.00E-89	ISS

Expression Patterns of Glyma08g43515

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43515 not represented in the dataset	Glyma08g43515 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43515

Paralog	Evidence	Comments
Glyma18g09940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43515 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g323000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43515

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g43515

Limit To All Plant Sequences

>Glyma08g43515.2   sequence type=transcript   gene model=Glyma08g43515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCATGTTCAAGGATGCTTTCGATGGGTCTGTTTCAGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATGGAAGCAGGATCTCAGGCTAAGACTTTTGCAGTTCTATCTGGAGTTGATAGTTTGGTTGTCTGCATCTTTGGAAGACTTCGAGGAAAGCATGATGCCATTAACGCTGGGCTAGCTGGATGTTGCGCTGGTCTTGCTACAAGTTTTCCAGGTACACCCCAAGCTCTTATACTGAACTGCCTCACCTATGGGGCTTTTTCTTTTATGATTGAAGGGGTAACCAAGAAACGATCAGCACTTGCATACCCCATGTCCAAGAAAACAAGTGCATAATTCCTACATCTCATTGAGAAACAGGGGTATGCTGCTTTTTTTGCATCATTAAGATAAGGTGTATAGCATATATATATGCACCTTTCTTTTGCCTTTCTTGTAGCCTTTATGAACAATTCTAGAGATAATAGGGGTGATGTACGATACATTATAACAAGGACATGGCTTGTTTGTATGCTATTAATTTCTGATCGAGTTTCAAATATGGCATG

Coding sequences of Glyma08g43515

Limit To All Plant Sequences

>Glyma08g43515.1   sequence type=CDS   gene model=Glyma08g43515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGGATGCAACAGTTAATTCGGTTAGTGAGGTGAACAATGCTCCCAATCCTAGAAAATCTGAAGGCCCTTCCTCTACTCCGTCTCCCACCACTTCCCTTCTTCTCTCCGCCGCCACTAGCACTGCTTGTGGCGCCCTCACCGGCTCCCTTTTCGGCTACGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATGGAAGCAGGATCTCAGGCTAAGACTTTTGCAGTTCTATCTGGAGTTGATAGTTTGGTTGTCTGCATCTTTGGAAGACTTCGAGGAAAGCATGATGCCATTAACGCTGGGCTAGCTGGATGTTGCGCTGGTCTTGCTACAAGTTTTCCAGGTACACCCCAAGCTCTTATACTGAACTGCCTCACCTATGGGGCTTTTTCTTTTATGATTGAAGGGGTAACCAAGAAACGATCAGCACTTGCATACCCCATGTCCAAGAAAACAAGTGCATAA

>Glyma08g43515.2   sequence type=CDS   gene model=Glyma08g43515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGGATGCTTTCGATGGGTCTGTTTCAGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATGGAAGCAGGATCTCAGGCTAAGACTTTTGCAGTTCTATCTGGAGTTGATAGTTTGGTTGTCTGCATCTTTGGAAGACTTCGAGGAAAGCATGATGCCATTAACGCTGGGCTAGCTGGATGTTGCGCTGGTCTTGCTACAAGTTTTCCAGGTACACCCCAAGCTCTTATACTGAACTGCCTCACCTATGGGGCTTTTTCTTTTATGATTGAAGGGGTAACCAAGAAACGATCAGCACTTGCATACCCCATGTCCAAGAAAACAAGTGCATAA

Predicted protein sequences of Glyma08g43515

Limit To All Plant Sequences

>Glyma08g43515.1   sequence type=predicted peptide   gene model=Glyma08g43515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDATVNSVSEVNNAPNPRKSEGPSSTPSPTTSLLLSAATSTACGALTGSLFGYGAGLIKKKGFKGSFMEAGSQAKTFAVLSGVDSLVVCIFGRLRGKHDAINAGLAGCCAGLATSFPGTPQALILNCLTYGAFSFMIEGVTKKRSALAYPMSKKTSA*

>Glyma08g43515.2   sequence type=predicted peptide   gene model=Glyma08g43515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKDAFDGSVSGAGLIKKKGFKGSFMEAGSQAKTFAVLSGVDSLVVCIFGRLRGKHDAINAGLAGCCAGLATSFPGTPQALILNCLTYGAFSFMIEGVTKKRSALAYPMSKKTSA*

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