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Report for Sequence Feature Glyma08g43480

Feature Type:gene_model
Chromosome:Gm08
Start:43293818
stop:43298486
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16240AT Annotation by Michelle Graham. TAIR10: syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232 SoyBaseE_val: 3.00E-121ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0010008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome membrane SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG3202 KOG SNARE protein TLG1/Syntaxin 6 JGI ISS
PTHR12380Panther SYNTAXIN JGI ISS
PTHR12380:SF7Panther SYNTAXIN 51 JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_G7J036UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-52 n=2 Tax=Medicago truncatula RepID=G7J036_MEDTR SoyBaseE_val: 2.00E-149ISS
UniRef100_I1KYD6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYD6_SOYBN SoyBaseE_val: 4.00E-164ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43480 not represented in the dataset

Glyma08g43480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g10060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g322600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g43480.2   sequence type=CDS   gene model=Glyma08g43480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCAATGGCATGATTTCTGAACGTAGTTCGTTTCCTGCATCTGGACCAGAAACCCAGCGACATGCTTCTGCTATAAGAAGGAAGATCACGATATTAGGGACCAGACTTGATAGCTTGCAATCTCTGTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGAAAGGACATGCTTGCAAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCTAACTTTGCAAATAGGGATAGTTTGCTAGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCATTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTGATTGGTATAGTGGGTTTGGTGGTTGTCATATGGCTGTTGGTCAAATATTTGTAA

>Glyma08g43480.2   sequence type=predicted peptide   gene model=Glyma08g43480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSDSWMKEYNEAVKLADDINGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLANLRTKVNQMASTLNMSNFANRDSLLGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIWLLVKYL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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