Glyma08g43460 - SoyBase

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Report for Sequence Feature Glyma08g43460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43268773
stop:	43273177
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55250	AT	Annotation by Michelle Graham. TAIR10: IAA carboxylmethyltransferase 1 \| chr5:22407589-22410291 REVERSE LENGTH=348	SoyBase	E_val: 1.00E-117	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0051749	GO-mf	Annotation by Michelle Graham. GO Molecular Function: indole acetic acid carboxyl methyltransferase activity	SoyBase	N/A	ISS
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI		ISS
UniRef100_B9SYY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Benzoate carboxyl methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SYY5_RICCO	SoyBase	E_val: 2.00E-127	ISS
UniRef100_I1KYD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43460

Paralog	Evidence	Comments
Glyma18g10080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g322300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g43460

Limit To All Plant Sequences

>Glyma08g43460.2   sequence type=transcript   gene model=Glyma08g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAAAATGTGTTAAATTTTGGGACTCAGGTGCCAGAATCTGTTTTGGACAAGAGGTCAAGTGCACACAACAAGGGCAGGGTGTTTATCCATGGTGCTAGTGAGATCACTGCAAATGCTTACAAAAAACAATTCCAAACAGACCTAGCAACCTTCTTGAGCTCAAGGGCTGTGGAATTGAAGAGAGGGGGGTCCATGTTCTTGGTTTGCTTAGGCAGAACTTCTGTGGACCCCACAGACCAGGGTGGGGCTGGCCTCCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCGGTGAGAAAAGAGACAGTTTCAACATTCCAGTGTATGCACCAAGCCTGCAAGACTTCAGGGAGGTGGTTGAAGCCGATGGTTCATTTGCCATAAACAAGCTTGAGGTTTTCAAAGGTGGAAGTCCTCTTGTAGTGAACCAGCCAGATGATGATGGTGAAGTTGGGAGGGCCCTTGCGAACAGCTGCAGGAGTGTTTCTGGTGTCCTTGTTGATGCTCACATTGGTGACAAGCTTAGTGAAGAACTGTTTATGAGAGTGGAACGTAGAGCCACAAGCCATGGCAAAGAGTTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCTATGATAAGAGACAAACATAACAAGAGGACAAAGAAAGGGTGGCTTATTTAGTTCTCTTATTATCCCTCTCTTTCTTTTTGTGTGTGTATGTTTTTTTTTTTTTTTGCACTTTTTATTGCATAGAAAAGAGTGAAAACACTCATGAGAGACCGAAAAGAGGGTACTTCAGCACTTGCTATATGCCTCTATTTTTCTCCCTCTTATGAGTTTTTTTTTTTTTTGTGTTCTTGCTGACAGATCTAGCTACTTTCTACACATCATGTGCTTTCTGACTTGTGTCCCCTTGTATCAGAACTATGAAAGCTTTCTTAATAGCTTATCATAGTGTGGATGTACATGTCCATATTTTGTGAAAGTAGCATGAATGGAACGGTGTGCCTTCTGTGCCTAACAAATGGAGTGTCG

Coding sequences of Glyma08g43460

Limit To All Plant Sequences

>Glyma08g43460.1   sequence type=CDS   gene model=Glyma08g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACAATGTTGTAGTGTCCAATATGGAGCTAGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGTGAGGGAAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAGTCCATGCATCACCTTCTCAAAGAAGCCCTAGATGGAGTTCAACTTCAGGCCCCTAACATACCTTTTGTGGTTGTGGATTTGGGGTGTTCATGTGGCATCAACACCATCAATGTGGTGCCAGAATCTGTTTTGGACAAGAGGTCAAGTGCACACAACAAGGGCAGGGTGTTTATCCATGGTGCTAGTGAGATCACTGCAAATGCTTACAAAAAACAATTCCAAACAGACCTAGCAACCTTCTTGAGCTCAAGGGCTGTGGAATTGAAGAGAGGGGGGTCCATGTTCTTGGTTTGCTTAGGCAGAACTTCTGTGGACCCCACAGACCAGGGTGGGGCTGGCCTCCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCGGTGAGAAAAGAGACAGTTTCAACATTCCAGTGTATGCACCAAGCCTGCAAGACTTCAGGGAGGTGGTTGAAGCCGATGGTTCATTTGCCATAAACAAGCTTGAGGTTTTCAAAGGTGGAAGTCCTCTTGTAGTGAACCAGCCAGATGATGATGGTGAAGTTGGGAGGGCCCTTGCGAACAGCTGCAGGAGTGTTTCTGGTGTCCTTGTTGATGCTCACATTGGTGACAAGCTTAGTGAAGAACTGTTTATGAGAGTGGAACGTAGAGCCACAAGCCATGGCAAAGAGTTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCTATGA

>Glyma08g43460.2   sequence type=CDS   gene model=Glyma08g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTGGTTTGCTTAGGCAGAACTTCTGTGGACCCCACAGACCAGGGTGGGGCTGGCCTCCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCGGTGAGAAAAGAGACAGTTTCAACATTCCAGTGTATGCACCAAGCCTGCAAGACTTCAGGGAGGTGGTTGAAGCCGATGGTTCATTTGCCATAAACAAGCTTGAGGTTTTCAAAGGTGGAAGTCCTCTTGTAGTGAACCAGCCAGATGATGATGGTGAAGTTGGGAGGGCCCTTGCGAACAGCTGCAGGAGTGTTTCTGGTGTCCTTGTTGATGCTCACATTGGTGACAAGCTTAGTGAAGAACTGTTTATGAGAGTGGAACGTAGAGCCACAAGCCATGGCAAAGAGTTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCTATGA

Predicted protein sequences of Glyma08g43460

Limit To All Plant Sequences

>Glyma08g43460.1   sequence type=predicted peptide   gene model=Glyma08g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDNVVVSNMELERLLSMKGGKGEGSYANNSQAQAIHAKSMHHLLKEALDGVQLQAPNIPFVVVDLGCSCGINTINVVPESVLDKRSSAHNKGRVFIHGASEITANAYKKQFQTDLATFLSSRAVELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISGEKRDSFNIPVYAPSLQDFREVVEADGSFAINKLEVFKGGSPLVVNQPDDDGEVGRALANSCRSVSGVLVDAHIGDKLSEELFMRVERRATSHGKELLEQLQFFHIVASLSFAL*

>Glyma08g43460.2   sequence type=predicted peptide   gene model=Glyma08g43460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISGEKRDSFNIPVYAPSLQDFREVVEADGSFAINKLEVFKGGSPLVVNQPDDDGEVGRALANSCRSVSGVLVDAHIGDKLSEELFMRVERRATSHGKELLEQLQFFHIVASLSFAL*

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