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Report for Sequence Feature Glyma08g43440

Feature Type:gene_model
Chromosome:Gm08
Start:43247036
stop:43249818
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g43440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22320AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238 SoyBaseE_val: 5.00E-29ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B7F1Y4UniRef Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:002-156-B04, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F1Y4_ORYSJ SoyBaseE_val: 5.00E-07ISS
UniRef100_I1KYD2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYD2_SOYBN SoyBaseE_val: 3.00E-127ISS

Expression Patterns of Glyma08g43440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43440 not represented in the dataset
Glyma08g43440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43440
ParalogEvidenceComments
Glyma18g10110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g322100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g43440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g43440
>Glyma08g43440.1   sequence type=CDS   gene model=Glyma08g43440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCGGTGGGCTCGAGACTCAGCCGCGCCACCTCCCGTTACGGCGCCCCCACGGTGTTCAGCGGCCCCGTCAGAAAGTGGAAGAAGAAGTGGGTCCACGTCACCCCCTCTTCCTTACCCAACAACAACTCACACTCTCACACCAACAACTTCACCACCACCACCACCAACGATTCCTCTCGCCTCCTCCTCCGCCGTTGGACTCCAACTACCGCCGATGACTCCGCCGGAGCCGTCTCCGACGATCCTCCCCGAAGAAAGTTCCGTTACACCCCTATTGCTGTGCTAGAAGAACAGAAAAAGATGAATGTTGTGAAGGCTGAACATGAACCCACAATTGAGGCTGACCAATTGGCATTTAGACAGACAAATGTGACTCACGAGATGCAGGGGAAACTAAACATGAATGAAATGTTGGAGGAAACCAAGGATTCAAACATTGGTAATTTGGATCTTGGTTCAGACTTCCAAAGCAACACCGGTGAAAACAGCCACGACAGTGATTCTCAATTGGAAAATAGTATCTAG
Predicted protein sequences of Glyma08g43440
>Glyma08g43440.1   sequence type=predicted peptide   gene model=Glyma08g43440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVGSRLSRATSRYGAPTVFSGPVRKWKKKWVHVTPSSLPNNNSHSHTNNFTTTTTNDSSRLLLRRWTPTTADDSAGAVSDDPPRRKFRYTPIAVLEEQKKMNVVKAEHEPTIEADQLAFRQTNVTHEMQGKLNMNEMLEETKDSNIGNLDLGSDFQSNTGENSHDSDSQLENSI*






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