Glyma08g43430 - SoyBase

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Report for Sequence Feature Glyma08g43430

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43240977
stop:	43245386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55200	AT	Annotation by Michelle Graham. TAIR10: Co-chaperone GrpE family protein \| chr5:22394705-22396335 FORWARD LENGTH=302	SoyBase	E_val: 3.00E-97	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
KOG3003	KOG	Molecular chaperone of the GrpE family	JGI		ISS
PTHR21237	Panther	GRPE PROTEIN	JGI		ISS
PTHR21237:SF6	Panther	GRPE PROTEIN, MITOCHONDRIAL	JGI		ISS
PF01025	PFAM	GrpE	JGI		ISS
UniRef100_I1KYD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GrpE protein homolog n=1 Tax=Glycine max RepID=I1KYD1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KYD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: GrpE protein homolog n=1 Tax=Glycine max RepID=I1KYD1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43430

Paralog	Evidence	Comments
Glyma18g10120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g322000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43430

Limit To All Plant Sequences

>Glyma08g43430.2   sequence type=CDS   gene model=Glyma08g43430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAGATTAATCCATGGAACTGGTGCTTGAAGAGGCCACAAACCAGAAAGAAGGGCAATATCGTCAACAAAGAAACATTCCCCATAAACCCTAACCCCCAAACTCACGAACCTAAGAAAAACAACATTTGTTTTCTTTCTGTCCAAGCAAATTTTCCCTCATTTATTCTCCTCTCCTCACAAATCACTTCCCTTATTCAATACCAAATCAAATTATTCCTTCTCAATCGATTCTCTTCGGCCATGTTTGCTTACAGGGTTTTGTCCCGTTCCTCTGCCACCCTTTCTCGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCAACCTCTCCAATAACTTCAATTCCCTCCTTCACCCATCTCCCAACAAGCTGATTCCAGTTCAAACCAATTTTCTGAATTCAATGAATCCATCATTGACTTCGAGATTTGGATTTTCTTCAACGGCCTCACATGAACATGCAAGTGAAGGAGCAAAGGTATCTGATCAGTCTGAACAAGCCGAAGCTGCGGATCAAACCAAAGAATCAGATGTAGAGATTGAATGTGATCTGTCCAGGGATGATTTGATAAAGCTTGTTGCTGAGAAGGAACAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTTCTGCGAACTTATGCAGAGATGGAGAATGTCATGGATAGGACACGACGCGAAGCGGAGAATTCGAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGACGTCGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGCTTTTCGAAAATTGAATCTCCTGAGGAGTCTTCTGAAGCAGCAGAACTCCTGAAAACACTTCTAAAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGTACTCAAAAAGTTTGGTGTGAAAAAATTTGATCCTACAAATGAGCCTTTTGATCCACACATGCACAATGCCATCTTCCAAATCCCTGATGCTTCCAAGGCTCCTGGCACTGTTGGAGTTGTTCTGAAGGCAGGATATATGCTCTATGATCGTGTTCTTCGTCCGGCAGAAGTTGGTGTAACTCAAGAAGTGGAGGATAACTAA

Predicted protein sequences of Glyma08g43430

Limit To All Plant Sequences

>Glyma08g43430.2   sequence type=predicted peptide   gene model=Glyma08g43430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKINPWNWCLKRPQTRKKGNIVNKETFPINPNPQTHEPKKNNICFLSVQANFPSFILLSSQITSLIQYQIKLFLLNRFSSAMFAYRVLSRSSATLSRSFTLFSVSRNSQPFSTNLSNNFNSLLHPSPNKLIPVQTNFLNSMNPSLTSRFGFSSTASHEHASEGAKVSDQSEQAEAADQTKESDVEIECDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIESPEESSEAAELLKTLLKGVEMTEKQLAEVLKKFGVKKFDPTNEPFDPHMHNAIFQIPDASKAPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVEDN*

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