Glyma08g43390 - SoyBase

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Report for Sequence Feature Glyma08g43390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43227801
stop:	43230035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30050	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr2:12825540-12826448 FORWARD LENGTH=302	SoyBase	E_val: 0	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006900	GO-bp	Annotation by Michelle Graham. GO Biological Process: membrane budding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005643	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1332	KOG	Vesicle coat complex COPII, subunit SEC13	JGI		ISS
PTHR11024	Panther	PROTEIN TRANSPORT PROTEIN SEC13-RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_D7UPM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SEC13 family protein n=1 Tax=Lotus japonicus RepID=D7UPM9_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1N0J6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N0J6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g321800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43390

Limit To All Plant Sequences

>Glyma08g43390.2   sequence type=CDS   gene model=Glyma08g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTGAGAGCCCATAAAAACAAAACAAAAGAACAAAACGGTAACATTTCTTTTTTTTCTCTACTCTCATCTTTTCAGTTTATCTGTTTCTCAATCGTTAGATCTCATCTTATACTCACCGGCGAGTCCATCTCGCGCCAGCGTCGACGCCGCTCCGGCAACCGCTCCGGCCACCGCCTTTGGTTCCCTCACTTTCTCGTCCTTCTTCTTCTCAGAAATATGCCTTCTCAGAAAGTTGAAACGGGTCATCAAGACACGGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTGGCCACGGCTTCATCAGATCACACAATTAAGATAATTGGGGTGAGTAATACGGCCTCTCAGCATCTCGCAACATTGACTGGTCACCAAGGACCTGTTTGGCAAGTGGCGTGGGCTCACCCTAAGTTTGGTTCTCTACTTGCATCGTGTTCCTATGATGGTCGTGTCATTGTTTGGAAGGAGGGCAACCAAAATGAATGGACTCAAGCTCATGTGTTTGATGACCACAAGTCATCTGTGAATTCGGTTGCTTGGGCGCCTCACGAGTTGGGTCTTTGCTTGGCTTGTGGCTCGTCTGATGGGAATATATCTGTTCTGACTGCAAGAGCAGACGGTGGCTGGGACACTGTGAGAATTGATCAGGCTCATCCAGTTGGTGTCACTTCGGTGTCATGGGCGCCATCGATGGCACCCGGAGCCCTTGTCGGTGCAGGGTTGCTTGATCCAGTACAGAAGCTGTGCTCTGGTGGTTGTGATAATACTGTGAAGGTATGGAAGCTAAACAATGGACTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACGGATTGGGTTCGAGATGTTGCTTGGGCACCCAATTTAGGGCTCCCTAAATCTACCATTGCTAGCGCATCACAGGACGGTAAAGTGATTATATGGACCGTGGCGAAAGAGGGGGATCAGTGGGAAGGCAAGGTTTTGAATGATTTCAACACCCCTGTTTGGAGGGTCTCATGGTCATTGACAGGAAACATATTGGCTGTGGCTGATGGGAACAACAATGTGACATTGTGGAAGGAAGCAGTTGATGGGGAATGGCAACAGGTGACAACAGTGGAGCCTTAG

Predicted protein sequences of Glyma08g43390

Limit To All Plant Sequences

>Glyma08g43390.2   sequence type=predicted peptide   gene model=Glyma08g43390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVRAHKNKTKEQNGNISFFSLLSSFQFICFSIVRSHLILTGESISRQRRRRSGNRSGHRLWFPHFLVLLLLRNMPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQVAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLACGSSDGNISVLTARADGGWDTVRIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCSGGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVEP*

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