Glyma08g43380 - SoyBase

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Report for Sequence Feature Glyma08g43380

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43220352
stop:	43226375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20300	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3537) \| chr3:7079832-7081809 REVERSE LENGTH=452	SoyBase	E_val: 0	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF12056	PFAM	Protein of unknown function (DUF3537)	JGI		ISS
UniRef100_I1KYC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYC8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8VXV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g20300/MQC12_5 n=2 Tax=Arabidopsis thaliana RepID=Q8VXV8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43380

Paralog	Evidence	Comments
Glyma18g10180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g321700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43380

Limit To All Plant Sequences

>Glyma08g43380.1   sequence type=CDS   gene model=Glyma08g43380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGACGCTACCGCCGCCACCCCCGCCACGGCGCTGTTAGATCGCCGTGGCAAGTACAACCGCAGCGTCTCCCACGTGAACGACGAGTTCCACACGTTCCGCTCGTACCTCCGGTGGATGTGCGTGGACCAGTCCAACAACTTCACCGCCGCACTCTCCTGGTCCCTGTTCCTCCTCCTAGCCCTCGCCGTCCCCGCCGCGTCGCACTTCCTCCTCGCCTGCCCCGACTGCGACGCCCGCCACTCCCGCCCCTACGACGCCGTGGTGCAGCTCTCCCTCACCTCCGTCTCCGCCCTCTCCTTCCTCTGCCTCGCCGGCTTCGTCCGCAAGTACGGACTCCGAAGGTTCCTCTTCTTCGATAAGCTCTGCGATGAGAGCGAGACCGTTAGAACCAACTACATGGCGCAGCTCAATAGGTCAGTGAAGATCCTTTCGGTGTTTGTGGGGCCATGTTTTGTGGCCGAGTGTGCATACAAGATATGGTGGTACGCATCCGGAGCCTCACAGATCCCCTTCTTAGGAAACGTGTACGTGAGCGATGCGGTGGCGTGCATACTGGAACTGTGGTCCTGGCTGTACCGAACCACGGTGATCTTCCTAGTGTGCGTTCTGTTCCGTTTGATCTGCCACCTCCAGATCCTGCGGCTGCGCGACTTCGCGAGATTCTTCCACGTGGACTCCGATGTGGCGTCGGTGATGACGGAGCACCTTAGGATTAGGAGGCACCTGCGAATCATAAGCCACAGGTTCCGCGCGTTCATCCTACTCGCGCTTTTATTGGTCACCGGAAGCCAGCTGGCGTGCTTGCTTGTTACAACTAAACATACGCAAGATATGAATATTTACAAAACCGGTGAACTTGCGCTGTGCTCAGTTACACTCCTTTCTGCGTTGTGCATCTTGTTGCGTAGTGCGACGAAGATAACACACAAAGCACAAGCGATCACGGGGCTTGCTGCCAAGTGGCACGTTTGCGCGACGTTGGATTCTTTTGATGGAGTTGTAACGGAAGGTGAGACACCAATGGCTCCTCAAAGTTCCCATGAAACAGTGTTTCCTAATGTGGGAACGGATGGGGAATCAGAGACTGATGAAGCTGGTGATGAAGAAGATGAAATTGACACTACCAAGTTAATCCCATCCTATGCTTATAGCACCATCTCATATCAAAAGCGACAAGCTCTTGTAAATTACTTTGAGAATAACAGGGCAGGGATTACAGTATATGGATTCATGTTGGATAGGAGCACACTCCACACAATATTTGGCATTGAAATGTCGCTTGTTCTTTGGCTGCTTGGGAAAACCATAGGCTTCTCTTGA

Predicted protein sequences of Glyma08g43380

Limit To All Plant Sequences

>Glyma08g43380.1   sequence type=predicted peptide   gene model=Glyma08g43380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDATAATPATALLDRRGKYNRSVSHVNDEFHTFRSYLRWMCVDQSNNFTAALSWSLFLLLALAVPAASHFLLACPDCDARHSRPYDAVVQLSLTSVSALSFLCLAGFVRKYGLRRFLFFDKLCDESETVRTNYMAQLNRSVKILSVFVGPCFVAECAYKIWWYASGASQIPFLGNVYVSDAVACILELWSWLYRTTVIFLVCVLFRLICHLQILRLRDFARFFHVDSDVASVMTEHLRIRRHLRIISHRFRAFILLALLLVTGSQLACLLVTTKHTQDMNIYKTGELALCSVTLLSALCILLRSATKITHKAQAITGLAAKWHVCATLDSFDGVVTEGETPMAPQSSHETVFPNVGTDGESETDEAGDEEDEIDTTKLIPSYAYSTISYQKRQALVNYFENNRAGITVYGFMLDRSTLHTIFGIEMSLVLWLLGKTIGFS*

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