Report for Sequence Feature Glyma08g43370
Feature Type: gene_model
Chromosome: Gm08
Start: 43209840
stop: 43212346
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g43370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10770 AT
Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474
SoyBase E_val: 1.00E-124 ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0004190 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity
SoyBase N/A ISS
KOG1339
KOG
Aspartyl protease
JGI ISS
PTHR13683 Panther
ASPARTYL PROTEASES
JGI ISS
PTHR13683:SF98 Panther
CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED
JGI ISS
PF00026 PFAM
Eukaryotic aspartyl protease
JGI ISS
UniRef100_Q9LEW2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleoid DNA-binding protein cnd41-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LEW2_ARATH
SoyBase E_val: 2.00E-122 ISS
UniRef100_UPI0002338C66 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338C66 related cluster n=1 Tax=unknown RepID=UPI0002338C66
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g43370
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g43370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g321500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g43370
Coding sequences of Glyma08g43370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g43370.2 sequence type=CDS gene model=Glyma08g43370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCTAGACAATGAAAGGGTAAAGTATATTCAGTCCAGGCTCTCTAAGAATTTGGGTCGAGAAAATACTGTGAAGGATTTGGATTCAACTACCCTACCCGCCGAGTCTGGTAGCCTTATTGGGTCTGCAAACTATGTTGTTGTTGTTGGTCTTGGTACACCAAAGAGGGACTTGTCACTTGTTTTTGACACAGGTAGTGATCTTACATGGACTCAGTGTGAACCCTGTGCTGGTTCTTGCTACAAGCAGCAAGATGCAATCTTTGATCCATCAAAGTCTTCATCGTATACCAATATCACATGCACATCTTCCCTCTGCACTCAACTCACTTCTGATGGAATTAAGTCAGAATGCTCCTCATCCACAGATGCATCATGCATATATGACGCCAAATACGGTGACAATTCCACCTCCGTCGGCTTCTTGAGTCAGGAGCGCCTTACCATCACCGCCACCGACATCGTCGACGACTTCCTGTTCGGCTGCGGCCAAGACAATGAGGGCCTCTTCAATGGCTCCGCCGGCCTCATGGGCCTCGGCCGCCACCCCATTTCCATTGTCCAACAAACCTCCTCAAATTACAACAAAATTTTCTCCTACTGTCTCCCCGCCACCTCCAGCTCCCTTGGCCACCTCACCTTCGGCGCTTCCGCCGCCACCAATGCTAGTCTCATATACACTCCGTTGTCCACAATCTCCGGCGACAACTCCTTCTACGGTCTCGACATCGTCAGCATCTCCGTTGGCGGCACCAAGCTCCCTGCTGTCTCCTCCTCCACCTTCTCCGCCGGTGGCTCCATCATCGACTCCGGCACCGTGATCACGCGGCTGGCCCCGACCGTGTACGCCGCGCTCCGGTCGGCATTTCGGAGGGTTGAAAGTGAGCAACAAGTGTGTTTGGCTTTTGCTGCAAATGGGAGTGACAATGATATTACGGTATTTGGGAATGTGCAACAAAAAACACTAGAGGTCGTGTATGATGTTAAGGGTGGGAGGATAGGGTTTGGTGCTGCTGGGTGTAAGTGA
Predicted protein sequences of Glyma08g43370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g43370.2 sequence type=predicted peptide gene model=Glyma08g43370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNLDNERVKYIQSRLSKNLGRENTVKDLDSTTLPAESGSLIGSANYVVVVGLGTPKRDLSLVFDTGSDLTWTQCEPCAGSCYKQQDAIFDPSKSSSYTNITCTSSLCTQLTSDGIKSECSSSTDASCIYDAKYGDNSTSVGFLSQERLTITATDIVDDFLFGCGQDNEGLFNGSAGLMGLGRHPISIVQQTSSNYNKIFSYCLPATSSSLGHLTFGASAATNASLIYTPLSTISGDNSFYGLDIVSISVGGTKLPAVSSSTFSAGGSIIDSGTVITRLAPTVYAALRSAFRRVESEQQVCLAFAANGSDNDITVFGNVQQKTLEVVYDVKGGRIGFGAAGCK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
