Glyma08g43320 - SoyBase

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Report for Sequence Feature Glyma08g43320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43153033
stop:	43159584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24830	AT	Annotation by Michelle Graham. TAIR10: zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein \| chr2:10576993-10579154 REVERSE LENGTH=497	SoyBase	E_val: 2.00E-177	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2185	KOG	Predicted RNA-processing protein, contains G-patch domain	JGI		ISS
PTHR23329	Panther	TUFTELIN-INTERACTING PROTEIN 11-RELATED	JGI		ISS
PTHR23329:SF2	Panther	ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN PROTEIN	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
UniRef100_B9RNS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RNS4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KYC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYC3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g43320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43320

Paralog	Evidence	Comments
Glyma18g10210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g321000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43320

Limit To All Plant Sequences

>Glyma08g43320.1   sequence type=CDS   gene model=Glyma08g43320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTTGGATTTGGTGGTGGCAATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTGGAACTTCAATTGCAAGAACAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCGACCCTGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAGAAAGTGGATCCCCTTGATCCCACTTATGTTGAACCAGAGCCATTGGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCAAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGACGACGGAAGTTCTGTGAAACTTGGGGCAGAAGAAATGGCACTGTCTGAGCATGCAGAAATGAGTGACATAGAGAGTGATTCCAGCTTAGATCAATCCGATTCCAGTGACTATGAGGAGGAGGAGGAATCGCAAGGCATAGGATTTCTGGAGAGTACCAATCTACAGAGAGGTATTCAAACTGAAACTGCGACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATAGCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCATGCACTCGAGTCTCATAAAAGGGAAGAGAACAAAGAGAAGCAAGGCAAGAAGAAACAGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAACCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAATGAGGCTTTTGGCGGTGGATTGATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAGAAGGTGGATAGACGAGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATTAGGGTTGAAAAGCTCGAGCACATTGTCAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG

Predicted protein sequences of Glyma08g43320

Limit To All Plant Sequences

>Glyma08g43320.1   sequence type=predicted peptide   gene model=Glyma08g43320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLDLVVAMGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEKVDPLDPTYVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELKSWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEMSDIESDSSLDQSDSSDYEEEEESQGIGFLESTNLQRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIAVKVLPPKQSLDHALESHKREENKEKQGKKKQSRGGKRKREKKFAEANRAAKEEEESASDVFALINNHLAMHNEAFGGGLMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKIRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF*

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