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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30050 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: membrane budding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1332 | KOG | Vesicle coat complex COPII, subunit SEC13 | JGI | ISS | |
| PTHR11024 | Panther | PROTEIN TRANSPORT PROTEIN SEC13-RELATED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_D7UPM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SEC13 family protein n=1 Tax=Lotus japonicus RepID=D7UPM9_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KYB6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYB6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g43250 not represented in the dataset |
Glyma08g43250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g320100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g43250.4 sequence type=transcript gene model=Glyma08g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGTGAGATCCCATAAAAACAAAACAAAAGGACAAAACGACAGCACTTCTTCTCTTCTCTCATTTTTCAGTTTCTCAGTTTCTTATTCGTTAATCGTTAGATCTCATCTTACACTCACCGGCGAGTCCATCTCGCGCCACCGTCGACTCAGCTCCGGCCATCGCCGTTGATTCCCTCACTTTCTCACTCTTCTTATTCTTCTTCTCAGCGGAAATATGCCTTCTCAGAAGGTTGAAACGGGTCATCAAGACACGGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTGGCCACGGCTTCATCAGATCACACAATCAAGATAATTGGGGTGAGCAACTCGGCCTCTCAGCATCTAGCAACCTTGACCGGTCACCAAGGACCTGTATGGCAAGTGGTGTGGGCTCACCCTAAGTTTGGTTCTCTACTTGCGTCTTGTTCCTATGATGGCCGTGTCATTGTTTGGAAGGAGGGCAACCAAAATGAATGGACTCAAGCTCATGTGTTTGACGACCACAAGTCATCTGTGAATTCGGTTGCTTGGGCGCCTCATGAGTTGGGTCTCTGCTTGGCTTGTGGCTCGTCTGATGGGAATATATCTGTTTTGACTGCAAGAGCAGATGGTGGCTGGGACACTGCGAGAATTGATCAGGCTCATCCAGTTGGTGTCACTTCGGTGTCATGGGCACCATCGATGGCACCCGGAGCCCTTGTCGGTGCAGGGCTGCTTGATCCTGTACAGAAGCTGTGCTCTGGTGGTTGTGATAATACTGTGAAGGTATGGAAGCTAAACAATGGACTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACGGATTGGGTTCGAGATGTTGCTTGGGCACCCAATTTAGGGCTCCCTAAATCTACCATTGCTAGCGCATCACAGGACGGTAAAGTGATTATATGGACCGTGGCGAAAGAGGGGGATCAGTGGGAAGGCAAGGTTTTGAATGATTTCAACACCCCTGTTTGGAGGGTCTCATGGTCATTGACAGGAAACATATTGGCTGTGGCTGATGGGAACAACAATGTGACATTGTGGAAGGAAGCAGTTGATGGGGAATGGCAACAGGTGACAACAGTGGAGCCTTAGAATGTGATATTTTTCCTTTTGAAAATGGTTAGAATTTTCGTTTTGAAATATAGTTGACATCTTGTTTCTTTGCATATTATACAGTTGATTAATTGTGCTTCATAATGCACTAAGTTCCTTGAGGTTTGTGATCCATTGAGTATTTTGTGCTTGGAAGAATGAAGTTGATTAGTTTGAGTTGTTTTAAGATTTAGAATGATGTTTTCCAAGCATATAATGTGACAATATCTTATATTCCGGGAGTTGCATAAATTAATGGCTGTGGCGTTTAATTTTGGATTATCGAGATTAATCCATCACCATTAGTAAATAATATC
>Glyma08g43250.3 sequence type=CDS gene model=Glyma08g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTCAGAAGGTTGAAACGGGTCATCAAGACACGGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTGGCCACGGCTTCATCAGATCACACAATCAAGATAATTGGGGTGAGCAACTCGGCCTCTCAGCATCTAGCAACCTTGACCGGTCACCAAGGACCTGTATGGCAAGTGGTGTGGGCTCACCCTAAGTTTGGTTCTCTACTTGCGTCTTGTTCCTATGATGGCCGTGTCATTGTTTGGAAGGAGGGCAACCAAAATGAATGGACTCAAGCTCATGTGTTTGACGACCACAAGTCATCTGTGAATTCGGTTGCTTGGGCGCCTCATGAGTTGGGTCTCTGCTTGGCTTGTGGCTCGTCTGATGGGAATATATCTGTTTTGACTGCAAGAGCAGATGGTGGCTGGGACACTGCGAGAATTGATCAGGCTCATCCAGTTGGTGTCACTTCGGTGTCATGGGCACCATCGATGGCACCCGGAGCCCTTGTCGGTGCAGGGCTGCTTGATCCTGTACAGAAGCTGTGCTCTGGTGGTTGTGATAATACTGTGAAGGTATGGAAGCTAAACAATGGACTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACGGATTGGGTTCGAGATGTTGCTTGGGCACCCAATTTAGGGCTCCCTAAATCTACCATTGCTAGCGCATCACAGGACGGTAAAGTGATTATATGGACCGTGGCGAAAGAGGGGGATCAGTGGGAAGGCAAGGTTTTGAATGATTTCAACACCCCTGTTTGGAGGGTCTCATGGTCATTGACAGGAAACATATTGGCTGTGGCTGATGGGAACAACAATGTGACATTGTGGAAGGAAGCAGTTGATGGGGAATGGCAACAGGTGACAACAGTGGAGCCTTAG >Glyma08g43250.4 sequence type=CDS gene model=Glyma08g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTCAGAAGGTTGAAACGGGTCATCAAGACACGGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTGGCCACGGCTTCATCAGATCACACAATCAAGATAATTGGGGTGAGCAACTCGGCCTCTCAGCATCTAGCAACCTTGACCGGTCACCAAGGACCTGTATGGCAAGTGGTGTGGGCTCACCCTAAGTTTGGTTCTCTACTTGCGTCTTGTTCCTATGATGGCCGTGTCATTGTTTGGAAGGAGGGCAACCAAAATGAATGGACTCAAGCTCATGTGTTTGACGACCACAAGTCATCTGTGAATTCGGTTGCTTGGGCGCCTCATGAGTTGGGTCTCTGCTTGGCTTGTGGCTCGTCTGATGGGAATATATCTGTTTTGACTGCAAGAGCAGATGGTGGCTGGGACACTGCGAGAATTGATCAGGCTCATCCAGTTGGTGTCACTTCGGTGTCATGGGCACCATCGATGGCACCCGGAGCCCTTGTCGGTGCAGGGCTGCTTGATCCTGTACAGAAGCTGTGCTCTGGTGGTTGTGATAATACTGTGAAGGTATGGAAGCTAAACAATGGACTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACGGATTGGGTTCGAGATGTTGCTTGGGCACCCAATTTAGGGCTCCCTAAATCTACCATTGCTAGCGCATCACAGGACGGTAAAGTGATTATATGGACCGTGGCGAAAGAGGGGGATCAGTGGGAAGGCAAGGTTTTGAATGATTTCAACACCCCTGTTTGGAGGGTCTCATGGTCATTGACAGGAAACATATTGGCTGTGGCTGATGGGAACAACAATGTGACATTGTGGAAGGAAGCAGTTGATGGGGAATGGCAACAGGTGACAACAGTGGAGCCTTAG
>Glyma08g43250.3 sequence type=predicted peptide gene model=Glyma08g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNSASQHLATLTGHQGPVWQVVWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLACGSSDGNISVLTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCSGGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVEP* >Glyma08g43250.4 sequence type=predicted peptide gene model=Glyma08g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNSASQHLATLTGHQGPVWQVVWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLACGSSDGNISVLTARADGGWDTARIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCSGGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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