SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26860 | AT | Annotation by Michelle Graham. TAIR10: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr4:13503291-13504693 REVERSE LENGTH=244 | SoyBase | E_val: 4.00E-139 | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG3157 | KOG | Proline synthetase co-transcribed protein | JGI | ISS | |
| PTHR10146 | Panther | PROLINE SYNTHETASE ASSOCIATED PROTEIN | JGI | ISS | |
| PF01168 | PFAM | Alanine racemase, N-terminal domain | JGI | ISS | |
| UniRef100_B9STY6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proline synthetase associated protein, putative n=1 Tax=Ricinus communis RepID=B9STY6_RICCO | SoyBase | E_val: 2.00E-145 | ISS |
| UniRef100_I1KYB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYB1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g43230 not represented in the dataset |
Glyma08g43230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g10370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g319900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g43230.3 sequence type=transcript gene model=Glyma08g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGGCTCCTTTGTTTTGTGTTCAGTGTCCAACCACCTCAACATAGAGACGAGACACCTCACTCGACAACGCGCGCGCCACTTGTTTTTCGCTCCGTCCCATAATCCAAACCACCCTCTGATTCCCGAACCCAATGACTTCTCCGCTGGTGGCGGAGGGCGCCGCCATGACGGCGTTCCGGTCGGTGATGCTCCGGGTGCATCAGGCGGCGGAGAGATCCGGGTCCAAACCCGAGCGGGTCCGGGTCGTGGCGGTTTCCAAGACGAAACCCGTCACTCTGATTCAACAACTCTACGACGCCGGCCACCGATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAGTCAAAACACTTTTGGGTGGAGTTCCAAATCTGGCCATGGTCCAGAGTGTGGACAATCAGAAGGTAGCAAATCATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAGGAGGAATGTGAACTGTCAATGGGCATGTCTGGCGATTTTGAGTTAGCGCTCATCAGGGAATGAATTGACAATTACCATAGGAATGAGGTTCTTTGATACTTGATGTGATGCTGATAGTGTATGATTGAGATGGGTAGTACTAATGTAAGAATTGGATCCACAATATTTGGACCGAGGGAGTATGCAAAGAAACAATAATAGCAAGAAGTTGTAATCTCTCCCTTCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCCTCTGTCTATCTATGTATACATACAGACTGTATTCATTAATGCACAGATGTTATGAACTGTATTGTATTCATTTACCTTTGTAATTGACGCGATGGAATTGGTAATAATAAAGTTCATATCTCTACAAAAAAACAAATAATAATCGATATGCAAAATCTCC
>Glyma08g43230.1 sequence type=CDS gene model=Glyma08g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTCTCCGCTGGTGGCGGAGGGCGCCGCCATGACGGCGTTCCGGTCGGTGATGCTCCGGGTGCATCAGGCGGCGGAGAGATCCGGGTCCAAACCCGAGCGGGTCCGGGTCGTGGCGGTTTCCAAGACGAAACCCGTCACTCTGATTCAACAACTCTACGACGCCGGCCACCGATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAGTCAAAACACTTTTGGGTGGAGTTCCAAATCTGGCCATGGTCCAGAGTGTGGACAATCAGAAGGTAGCAAATCATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAGGAGGAATGTGAACTGTCAATGGGCATGTCTGGCGATTTTGAGTTAGCGATTGAGATGGGTAGTACTAATGTAAGAATTGGATCCACAATATTTGGACCGAGGGAGTATGCAAAGAAACAATAA >Glyma08g43230.3 sequence type=CDS gene model=Glyma08g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTCTCCGCTGGTGGCGGAGGGCGCCGCCATGACGGCGTTCCGGTCGGTGATGCTCCGGGTGCATCAGGCGGCGGAGAGATCCGGGTCCAAACCCGAGCGGGTCCGGGTCGTGGCGGTTTCCAAGACGAAACCCGTCACTCTGATTCAACAACTCTACGACGCCGGCCACCGATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAGTCAAAACACTTTTGGGTGGAGTTCCAAATCTGGCCATGGTCCAGAGTGTGGACAATCAGAAGGTAGCAAATCATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAGGAGGAATGTGAACTGTCAATGGGCATGTCTGGCGATTTTGAGTTAGCGCTCATCAGGGAATGA
>Glyma08g43230.1 sequence type=predicted peptide gene model=Glyma08g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSPLVAEGAAMTAFRSVMLRVHQAAERSGSKPERVRVVAVSKTKPVTLIQQLYDAGHRYFGENYVQEIIEKAPQLPQDVEWHFIGHLQSNKVKTLLGGVPNLAMVQSVDNQKVANHLDRMVSTLGRNPLKVLVQVNTSGEESKSGIDPSNCVELAKHVKLSCPNLVYSGLMTIGMPDYTSTPQNFQTLSNCRTEVCKALEMPEEECELSMGMSGDFELAIEMGSTNVRIGSTIFGPREYAKKQ* >Glyma08g43230.3 sequence type=predicted peptide gene model=Glyma08g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSPLVAEGAAMTAFRSVMLRVHQAAERSGSKPERVRVVAVSKTKPVTLIQQLYDAGHRYFGENYVQEIIEKAPQLPQDVEWHFIGHLQSNKVKTLLGGVPNLAMVQSVDNQKVANHLDRMVSTLGRNPLKVLVQVNTSGEESKSGIDPSNCVELAKHVKLSCPNLVYSGLMTIGMPDYTSTPQNFQTLSNCRTEVCKALEMPEEECELSMGMSGDFELALIRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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