Report for Sequence Feature Glyma08g43220
Feature Type: gene_model
Chromosome: Gm08
Start: 43064282
stop: 43072607
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g43220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G20800 AT
Annotation by Michelle Graham. TAIR10: Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316
SoyBase E_val: 0 ISS
GO:0007275 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organismal development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3036
KOG
Protein involved in cell differentiation/sexual development
JGI ISS
PTHR12262 Panther
UNCHARACTERIZED
JGI ISS
PF04078 PFAM
Cell differentiation family, Rcd1-like
JGI ISS
UniRef100_B9STZ0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cell differentiation protein rcd1, putative n=1 Tax=Ricinus communis RepID=B9STZ0_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KYB0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYB0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g43220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g43220
Paralog Evidence Comments
Glyma18g10400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g43220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g319800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g43220
Coding sequences of Glyma08g43220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g43220.1 sequence type=CDS gene model=Glyma08g43220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAATTTGCCCCAATCGCTGTCGATGGGCGCGGCCTTCGGCGGAGGCGGCGCTCCGCCTCAGCCATCGAGTGTCGGCGGCGGAGCACAGGGTTCCGGCGCTGGCAAGGATCGGAAGATGGCGTCGGCGGAGCAGCTCGTGCTGGAACTCAGCAACCCTGAGCTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGAAGAGGGAGCTATTTCAAGATCTTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCTCATATACCTTTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTAATTGGTGCATTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCCCTGTGCCTGCGCACCATGGAAATGGGCAGTGAACTATCCAAAACAGTTGCAACATTTATTGTTCAAAAAATTCTGTTGGACGATGTGGGCTTGGACTATATTTGTACTACAGCGGAGCGCTTTTTCGCAGTAGGTCGAGTTCTGGGGAACATGGTGGCAGCTCTCGCTGAGCAACCCTCATCTCGTCTATTGAAGCATATCATTCGATGCTATCTTCGCCTATCAGATAATCCAAGGGCTTGTGATGCATTAAGAAGCTGTCTACCAGACATGTTAAGAGATGCTACTTTCAGCACTTGCCTTCGTGAAGACCCCACAACTAGGAGGTGGCTACAACAATTGCTTCACAATGTTGGAGGGAATCGGGTTCCTGCACTACAAGCTGGAGGAGGTTTCGATCATATGATTGTGACCTGA
Predicted protein sequences of Glyma08g43220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g43220.1 sequence type=predicted peptide gene model=Glyma08g43220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNLPQSLSMGAAFGGGGAPPQPSSVGGGAQGSGAGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSTCLREDPTTRRWLQQLLHNVGGNRVPALQAGGGFDHMIVT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
