Glyma08g43210 - SoyBase

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Report for Sequence Feature Glyma08g43210

Feature Type:	gene_model
Chromosome:	Gm08
Start:	43057830
stop:	43059325
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05553	PFAM	Cotton fibre expressed protein	JGI		ISS
UniRef100_C6SWQ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWQ0_SOYBN	SoyBase	E_val: 1.00E-126	ISS

Expression Patterns of Glyma08g43210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g43210

Paralog	Evidence	Comments
Glyma18g10410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g43210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g319700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43210

Limit To All Plant Sequences

>Glyma08g43210.1   sequence type=CDS   gene model=Glyma08g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGTTTAAGAAATCTCAAGTTCTAGTTCTCTTAGTTCTAGTTCTTCTTCTTCTCATCACACCCTTTTTACCTTCCTCTTTGAGACCAACCTACTTGTATTTCATTATAAACTTCCTCATCATGGCACTTTTTGCTGAAGCTGGCCTCATTTCAGATTTTTCTAGGCCTTTAGAAGATAAAAAGCAATCTACTTCTGTTACCAATTCCACTTCTGAGAAAAGAGAAGTTTCCAATTCCACCCCTACAGTTGTTGGAGATGATGTCTCAGAACATGTTGAAAAGTCTGCATCTGAGAGGGTTGTTTGTGTCACCAAAGTGGACAAGGTGCAAAATTCTCCTTCAATGCCTACCCTTTTATTCATAGGGGGTGGAGAAGCTGATGAACAGGTCATGGATGAAGAGCTTGAAGCAGAAGAGGAGCTTGGAGGAGTAAATGGGCAAGAGCTCTTTACAAAAGCTGAGGCCTTCATTGGGAACTTCTACAAGCAACTGAAGATGCAAAGTGAGGAATCTTGGATTTATCAAAAAGCCCTTTAG

Predicted protein sequences of Glyma08g43210

Limit To All Plant Sequences

>Glyma08g43210.1   sequence type=predicted peptide   gene model=Glyma08g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKFKKSQVLVLLVLVLLLLITPFLPSSLRPTYLYFIINFLIMALFAEAGLISDFSRPLEDKKQSTSVTNSTSEKREVSNSTPTVVGDDVSEHVEKSASERVVCVTKVDKVQNSPSMPTLLFIGGGEADEQVMDEELEAEEELGGVNGQELFTKAEAFIGNFYKQLKMQSEESWIYQKAL*

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