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Report for Sequence Feature Glyma08g43130

Feature Type:gene_model
Chromosome:Gm08
Start:42988945
stop:42993170
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g43130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40710AT Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein | chr5:16295091-16296810 FORWARD LENGTH=272 SoyBaseE_val: 9.00E-106ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR21385Panther ZINC FINGER PROTEIN-RELATED JGI ISS
UniRef100_D9ZIT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: C2H2L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIT9_MALDO SoyBaseE_val: 4.00E-119ISS
UniRef100_I1KYA5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYA5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g43130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g319000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g43130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g43130
>Glyma08g43130.1   sequence type=CDS   gene model=Glyma08g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGATGTGGGTTTCGGATCATAGGTTGTTTCTTCTCTGCATTCTTTGTGGCCTCTGTTTTTGTCTGCAGTTCACAACGGGTCATGCAGGTTCAAATGCTGGAAGAACTTTGAATCAGGAGGGTGGTGATCATCAAATACATTGCTCTAGAGAAAGAAGTAGAACAGCTTGGAAGATCATTCAAGAGTATTTGATGCCATTTGTGGAGAAAGAAAAATACCACATCTCAAAAAGGTGTATGCTTCACCCTGACAATGACATATACAGAGATCAGGAGCAACATAAGTCTCATATAGATATAAACGAATGGCAGTGTAGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGCCAGTGCTTAGCAGATGTTTGTGGTGCTCTGCACTGTGACCATGAAATGAATTCTGGATCTAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAAACATAAACATCTATGTGAGAGCTTAGCCGATAGTTGTTTTCCTGTCAGTGATGGCCCTGCAGCAAGCCAACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACACAGCTGCACTGGAAGTAGGAAACCTTTCTCCAGAGGGCACAGGAAGAAGACAAATGTGTTCTACATCTTTGTGTCTATTTTGCTTGTGATACTGCTGCTACTATACTATCTCTACATTTACTTATATCAGAGAGGAATGAAAAGAGAAACTCAAGTGCTGAAGCGCATCTCACAAGCCAGCAGAAAGAAAAAGCCATCTTAA
Predicted protein sequences of Glyma08g43130
>Glyma08g43130.1   sequence type=predicted peptide   gene model=Glyma08g43130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKMWVSDHRLFLLCILCGLCFCLQFTTGHAGSNAGRTLNQEGGDHQIHCSRERSRTAWKIIQEYLMPFVEKEKYHISKRCMLHPDNDIYRDQEQHKSHIDINEWQCRYCKKSFYEEKHLDQHFDNRHSNLLNLSESQCLADVCGALHCDHEMNSGSKKSKCNPAAAAKHKHLCESLADSCFPVSDGPAASQLHEFFLHQFCDAHSCTGSRKPFSRGHRKKTNVFYIFVSILLVILLLLYYLYIYLYQRGMKRETQVLKRISQASRKKKPS*






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