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Report for Sequence Feature Glyma08g43120

Feature Type:gene_model
Chromosome:Gm08
Start:42987911
stop:42988809
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g43120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27670AT Annotation by Michelle Graham. TAIR10: heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227 SoyBaseE_val: 2.00E-35ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF18Panther HEAT SHOCK PROTEIN 26 JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_C6THQ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THQ1_SOYBN SoyBaseE_val: 5.00E-167ISS
UniRef100_G7J004UniRef Annotation by Michelle Graham. Most informative UniRef hit: Small heat shock protein n=1 Tax=Medicago truncatula RepID=G7J004_MEDTR SoyBaseE_val: 5.00E-120ISS

Expression Patterns of Glyma08g43120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g318900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g43120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g43120
>Glyma08g43120.1   sequence type=CDS   gene model=Glyma08g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAGCTCTACCAAATGTAGGTTTCCATGCCCGCACTTCATCTAGTAGAATGAACAAATTTTCCAATGTCAAATTGCTACCATTGACAAGCAAAAGGAATAGAACTTTCTGCAGCAATGTAAAGGCTATGGCAGGAGGTGAAACGAGTTTGCAGAAGTCAAAGCAGCAAGTGCAACCAAAGATGAAGGTGCCACAAGCTTCACCTAAAGTGCTGTTGAACCAGTTTCCAGTAGCAAGGACTGTGCAGCAAATGATGGACACAATGGAGAGGATGGTGGAGGATCCCTTGGTTTATGGTAGCACTTCACCTTTGATAGTTGTGGGAGACGATGAATACAGTAAGGGGAAGATTCCTTGGGCAATAAAGGAAGGCCAGAAAGATTACAAAATGAGATTCAACATGCCAGGAATGAACAAGAATGATGTCAAGGTATGGGTAGAACAGAACATGCTGGTGGTGAAGGCAGAGAAGGCACTCCAGGAGAACCATGAAGGTCAAGCAGACGGCAACGAAGACTGGCCTGCCAATAGCTATGGTAGATATAACCACAGGATAGCCCTCCCAGAAAATATTGAGTTTGATAAAATTAAGGCACAGGTCAAAGATGGGATTCTTTATGTAACAATTCCCAAAGCCAGCACTTCTTCAAAAGTAATTGGCATAGATGTACAGTAA
Predicted protein sequences of Glyma08g43120
>Glyma08g43120.1   sequence type=predicted peptide   gene model=Glyma08g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASALPNVGFHARTSSSRMNKFSNVKLLPLTSKRNRTFCSNVKAMAGGETSLQKSKQQVQPKMKVPQASPKVLLNQFPVARTVQQMMDTMERMVEDPLVYGSTSPLIVVGDDEYSKGKIPWAIKEGQKDYKMRFNMPGMNKNDVKVWVEQNMLVVKAEKALQENHEGQADGNEDWPANSYGRYNHRIALPENIEFDKIKAQVKDGILYVTIPKASTSSKVIGIDVQ*






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