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Report for Sequence Feature Glyma08g43102

Feature Type:gene_model
Chromosome:Gm08
Start:42982022
stop:42983159
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g43102
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21065AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11246375-11247763 FORWARD LENGTH=462 SoyBaseE_val: 9.00E-72ISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7I6Z3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I6Z3_MEDTR SoyBaseE_val: 5.00E-72ISS
UniRef100_I1N0M7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N0M7_SOYBN SoyBaseE_val: 2.00E-114ISS

Expression Patterns of Glyma08g43102
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g43102 not represented in the dataset
Glyma08g43102 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43102 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g318700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g43102
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g43102
>Glyma08g43102.1   sequence type=CDS   gene model=Glyma08g43102   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAGAAGGATGTTGTGTCTTGGAGTGCTATGATATCGGGTTATGCTCAACATGAATGTTTCTTGGAGGCTTTGGCATTGTTCCAAGAAATGCAGCTTCAAAGAGTTAGACCAGACGAGACTGCTTTAATATGTATACGAAATTTGGGTGTGTGGAAAATGCATTGGAGGAAAAAGGGAGTTTCTACCTGGAATATTGCTGTCATTCTTGGGTTGGCAATGAATGGATGTGCAGGTTTGCTTAAAGAAGCAGAGGAACTGATTAAGAGTATGCCAATGGCACCTGATGTTGCCACTTGGGGTGCTTTGCTCGGGGCTTGTAGAAACCACCATGACAATGAAATGGGGGAGATGTTGGGAAGGAAACTCATTCAGCTTCAGCCTGGCCATGATGGTTTTCATGTATTGTTGTCAAACATGTGTACTTCAAAAGGACATTGGGGCAATGTTCTTGAAATTAGAGGGGAGTTATGGCACAACATCGGGTGCATGATTGAAGCAAATGGGTCAGTTCATGAATTCTTGGCTGGAGATAAGACACACCAAGAAATAAATGATATTAAGCACATGTTAGATGTAGTGGCTGCAAAATTAAAGATTGAGAGCTATGTACTAACTACAAGTGAGGTTTCACTAGACATAGATGAAGAAGAGAAGGAAACTGCACTTTTCAGGCACAGTGAGAAACTTGCAGTTGCCTTTGGACTTATCACTATTTCTCTGCCAACTCCAATCAGAGTTACGAAGAATTTGCGCATATGTAATGATTGCCACACTGTTGTAAAGTTAATCTCCAAAGCATTTGATCGTGAAATTGTGGTAAGGGATCGTCATCGCTTTCATCACTTTAAGCATGGAGCTTGTTCCTGCATGGATTTTTGGTAG
Predicted protein sequences of Glyma08g43102
>Glyma08g43102.1   sequence type=predicted peptide   gene model=Glyma08g43102   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEKDVVSWSAMISGYAQHECFLEALALFQEMQLQRVRPDETALICIRNLGVWKMHWRKKGVSTWNIAVILGLAMNGCAGLLKEAEELIKSMPMAPDVATWGALLGACRNHHDNEMGEMLGRKLIQLQPGHDGFHVLLSNMCTSKGHWGNVLEIRGELWHNIGCMIEANGSVHEFLAGDKTHQEINDIKHMLDVVAAKLKIESYVLTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISLPTPIRVTKNLRICNDCHTVVKLISKAFDREIVVRDRHRFHHFKHGACSCMDFW*






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