Glyma08g43000 - SoyBase

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Report for Sequence Feature Glyma08g43000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42900380
stop:	42902074
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g43000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26930	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 97 \| chr4:13527770-13529172 FORWARD LENGTH=389	SoyBase	E_val: 3.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7IY34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7IY34_MEDTR	SoyBase	E_val: 7.00E-132	ISS
UniRef100_I1KY96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY96_SOYBN	SoyBase	E_val: 3.00E-177	ISS

Expression Patterns of Glyma08g43000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g43000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g317800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g43000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g43000

Limit To All Plant Sequences

>Glyma08g43000.2   sequence type=CDS   gene model=Glyma08g43000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATCCTCATGGATTATGTGGCAAAATGGTGAAGGGAATTGGAATGCAGTTCAGAGGAACACAGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTTAGATGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCACCTGAGGAAGAGAAGCTCATTGTTGATCTTCATGCACAGTTTGGGAACAAATGGGCCAGAATGGCTGCTTTGTTGCCTGGGAGAACAAACAATGAAATCAAGAACTATTGGAACACAGGGATCAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCAACACAATCGTTCCACAACACCAACCCCTCCAACCACACCTTTCCCATGCCTCACCCCAACAGGATCAAACCCCGACATTGCCACAAGTTTTGAGTTGTTCAATCAAAACCAACAACAACATCATCAACAACAACAACAATACCAATACCAACAACAACAACAATACCAACAACACCCTCTGTCTCCAACTGCATCTCATCATTCCCCTCTTAGTTCCCCTCTCCAACATAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCATCCTATTCACCTTCCCCTCTCTCCTTCACCTTCCAAAGACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTATTGCGCCTCTCCAAGCTACAACAACAACAACAACAACAACAACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCTGTTTCTTCAGGCTTCTCTCAGTTTTTTCAGCCCTCTTTGTTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTTAAGCCAGTACTATAAACCATCCCAAGAGCAAGACATTAAACTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTGATGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCGGGCAAGAACTCAAAGAAACGAGGCTACTTGAGTTTGAATGAGGGAAATAATGTGTTTAATGCATGCTGA

Predicted protein sequences of Glyma08g43000

Limit To All Plant Sequences

>Glyma08g43000.2   sequence type=predicted peptide   gene model=Glyma08g43000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSSWIMWQNGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWARMAALLPGRTNNEIKNYWNTGIKRRQRQGLPLYSDEHDQHNRSTTPTPPTTPFPCLTPTGSNPDIATSFELFNQNQQQHHQQQQQYQYQQQQQYQQHPLSPTASHHSPLSSPLQHRQPFTSSSPHNFLDHSPLPLSSSYSPSPLSFTFQRPAPMLSTPLRFKRYCASPSYNNNNNNNNLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSSLAFQPKLELPLSQYYKPSQEQDIKLDIEFNDPSFQSSSSGLMGDLLFEAQAMASGKNSKKRGYLSLNEGNNVFNAC*

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