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Report for Sequence Feature Glyma08g42955

Feature Type:gene_model
Chromosome:Gm08
Start:42884079
stop:42887116
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26930AT Annotation by Michelle Graham. TAIR10: myb domain protein 97 | chr4:13527770-13529172 FORWARD LENGTH=389 SoyBaseE_val: 2.00E-69ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PTHR10641:SF30Panther MYB-RELATED TRANSCRIPTION FACTOR JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_G7IY34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7IY34_MEDTR SoyBaseE_val: 6.00E-145ISS
UniRef100_I1KY94UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY94_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g42955 not represented in the dataset

Glyma08g42955 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g10921 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g317600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g42955.1   sequence type=CDS   gene model=Glyma08g42955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTATGGCAAACATTAGTGATGATGCAAGCAATGGTGAAAATGGATTCCTAGCAATGTTTGGTGGCGATGAAAGCGGTGGTGGGGGCAGTGGCGGTGTCGGTAGCGGTGGTGATCAGGGTGGTGGTAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGTTATCCTCATGGATTATGTGACAAAAAATGGTGAAGGGAATTGGAATGCAGTTCAGAGGAAAACAGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTTAGATGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCACCTGAGGAAGAGAAGCTCATTGTTGATCTTCATGCACAGTTTGGGAACAAATGGACCAGAATGGCTGCTTTGTTGCCTGGGAGAACAGACAATGAAATCAAGAACTGTTGGAACACAAGGATCAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCAACACCATCGTTCCACAACACCAACCCCCTCCAACCACACCTTTCCCATGCCTCACCCCAACAGGATCAAACCCCAACATTGCCACAATTCCCCTCTCCAACACAGACAACCCTTCACCTCTTCATCGCCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCATCCTCTTCACCTTCCCCTCTCTCCTTCACCTTCCAAAGATCAGCACCAATGCTAAGCACCACTCTTCGCTTCAAGCACTATTGCGCCTCTCCAAGCTACAACAACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCTGTTTCTTCAGGCTTCTCTCAGTTTTTTCAGCCCTCTTTGTTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTTAAGCCAGTACTATAAACCACCCGAAGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTGATGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTTGGGCAAGAACTCAAAGAAACGAGGCTACTTGAAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGCAAATTCATGAATGAGGATTTGTCATCATTGCTTACAGTGATTTCATCTTCCAATATGCAAGGTCATGAGTGTCACAACAACAGTGCCCGAGAAGTGTCCAATGTCCAATCCTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATCAAACCCATAGCTTCATTGTTTCCTCTCTCCAACACCAGAAACCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTAA

>Glyma08g42955.1   sequence type=predicted peptide   gene model=Glyma08g42955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGMANISDDASNGENGFLAMFGGDESGGGGSGGVGSGGDQGGGNVEDVALKKGPWTTAEDVILMDYVTKNGEGNWNAVQRKTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWTRMAALLPGRTDNEIKNCWNTRIKRRQRQGLPLYSDEHDQHHRSTTPTPSNHTFPMPHPNRIKPQHCHNSPLQHRQPFTSSSPHNFLDHSPLPLSSSSSPSPLSFTFQRSAPMLSTTLRFKHYCASPSYNNLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSSLAFQPKLELPLSQYYKPPEEQDIKLDIEFNDPSFQSSSSGLMGDLLFEAQAMALGKNSKKRGYLKPKPKEEAPDFSKFMNEDLSSLLTVISSSNMQGHECHNNSAREVSNVQSSGSGMTDDNFGLDIKPIASLFPLSNTRNHDENQGCYSWDN*







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