Report for Sequence Feature Glyma08g42955
Feature Type: gene_model
Chromosome: Gm08
Start: 42884079
stop: 42887116
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42955
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G26930 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 97 | chr4:13527770-13529172 FORWARD LENGTH=389
SoyBase E_val: 2.00E-69 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0048
KOG
Transcription factor, Myb superfamily
JGI ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PTHR10641:SF30 Panther
MYB-RELATED TRANSCRIPTION FACTOR
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_G7IY34 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7IY34_MEDTR
SoyBase E_val: 6.00E-145 ISS
UniRef100_I1KY94 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY94_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42955
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g42955
Paralog Evidence Comments
Glyma18g10921 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g42955 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g317600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42955
Coding sequences of Glyma08g42955
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42955.1 sequence type=CDS gene model=Glyma08g42955 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGTATGGCAAACATTAGTGATGATGCAAGCAATGGTGAAAATGGATTCCTAGCAATGTTTGGTGGCGATGAAAGCGGTGGTGGGGGCAGTGGCGGTGTCGGTAGCGGTGGTGATCAGGGTGGTGGTAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGTTATCCTCATGGATTATGTGACAAAAAATGGTGAAGGGAATTGGAATGCAGTTCAGAGGAAAACAGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTTAGATGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCACCTGAGGAAGAGAAGCTCATTGTTGATCTTCATGCACAGTTTGGGAACAAATGGACCAGAATGGCTGCTTTGTTGCCTGGGAGAACAGACAATGAAATCAAGAACTGTTGGAACACAAGGATCAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCAACACCATCGTTCCACAACACCAACCCCCTCCAACCACACCTTTCCCATGCCTCACCCCAACAGGATCAAACCCCAACATTGCCACAATTCCCCTCTCCAACACAGACAACCCTTCACCTCTTCATCGCCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCATCCTCTTCACCTTCCCCTCTCTCCTTCACCTTCCAAAGATCAGCACCAATGCTAAGCACCACTCTTCGCTTCAAGCACTATTGCGCCTCTCCAAGCTACAACAACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCTGTTTCTTCAGGCTTCTCTCAGTTTTTTCAGCCCTCTTTGTTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTTAAGCCAGTACTATAAACCACCCGAAGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTGATGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTTGGGCAAGAACTCAAAGAAACGAGGCTACTTGAAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGCAAATTCATGAATGAGGATTTGTCATCATTGCTTACAGTGATTTCATCTTCCAATATGCAAGGTCATGAGTGTCACAACAACAGTGCCCGAGAAGTGTCCAATGTCCAATCCTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATCAAACCCATAGCTTCATTGTTTCCTCTCTCCAACACCAGAAACCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTAA
Predicted protein sequences of Glyma08g42955
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42955.1 sequence type=predicted peptide gene model=Glyma08g42955 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGMANISDDASNGENGFLAMFGGDESGGGGSGGVGSGGDQGGGNVEDVALKKGPWTTAEDVILMDYVTKNGEGNWNAVQRKTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWTRMAALLPGRTDNEIKNCWNTRIKRRQRQGLPLYSDEHDQHHRSTTPTPSNHTFPMPHPNRIKPQHCHNSPLQHRQPFTSSSPHNFLDHSPLPLSSSSSPSPLSFTFQRSAPMLSTTLRFKHYCASPSYNNLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSSLAFQPKLELPLSQYYKPPEEQDIKLDIEFNDPSFQSSSSGLMGDLLFEAQAMALGKNSKKRGYLKPKPKEEAPDFSKFMNEDLSSLLTVISSSNMQGHECHNNSAREVSNVQSSGSGMTDDNFGLDIKPIASLFPLSNTRNHDENQGCYSWDN*