SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g42940

Feature Type:gene_model
Chromosome:Gm08
Start:42876845
stop:42878460
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g42940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26900AT Annotation by Michelle Graham. TAIR10: HIS HF | chr4:13515514-13519608 FORWARD LENGTH=592 SoyBaseE_val: 3.00E-18ISS
GO:0000105GO-bp Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0000107GO-mf Annotation by Michelle Graham. GO Molecular Function: imidazoleglycerol-phosphate synthase activity SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016763GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring pentosyl groups SoyBaseN/AISS
GO:0016833GO-mf Annotation by Michelle Graham. GO Molecular Function: oxo-acid-lyase activity SoyBaseN/AISS
PTHR21235Panther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H (IGP SYNTHASE SUBUNIT HISF/H) JGI ISS
PTHR21235:SF2Panther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF (IGP SYNTHASE SUBUNIT HISF) JGI ISS
PF00977PFAM Histidine biosynthesis protein JGI ISS
UniRef100_B9SVA2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Imidazole glycerol phosphate synthase subunit hisF n=1 Tax=Ricinus communis RepID=B9SVA2_RICCO SoyBaseE_val: 3.00E-18ISS
UniRef100_I1N0Y1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0Y1_SOYBN SoyBaseE_val: 4.00E-20ISS

Expression Patterns of Glyma08g42940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g317500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g42940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g42940
>Glyma08g42940.1   sequence type=CDS   gene model=Glyma08g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTATACTAAGATGGAGAAATTGCAAGAAATTGCAGTGTCCTTGGCGGTTGATTATTTGCTTCCCCCCTTAAAGAAGGCCAGCCAATTGTCTTCCCAATTGAAGGGGAGTAAAATAAGATATATGCCTTCTACCTTGACCCTCAACTTGTTATGTGGATTAATTATCAGTATAGGTATGGGTCAAGGAAAAGGATTTGATGTAGATTTAATTAAGTTGATATCAGATGCTGTAAGTATCCCTGTTATTGCAAGTGGCGGTGCTGGTGCTCCTCAACACTTCTCTGAGGGGAATGATTTTGATTTGTTAACCATAAAACCCTTTGTCTTTAAAAAATACCACAAACAAATATGGGATCATTTGGTGCCTATTCAGTCGGTAAAAGAGCATTTGTTGAAGGAAGGCATAGAAGTTTAA
Predicted protein sequences of Glyma08g42940
>Glyma08g42940.1   sequence type=predicted peptide   gene model=Glyma08g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IYTKMEKLQEIAVSLAVDYLLPPLKKASQLSSQLKGSKIRYMPSTLTLNLLCGLIISIGMGQGKGFDVDLIKLISDAVSIPVIASGGAGAPQHFSEGNDFDLLTIKPFVFKKYHKQIWDHLVPIQSVKEHLLKEGIEV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo