Glyma08g42930 - SoyBase

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Report for Sequence Feature Glyma08g42930

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42872278
stop:	42875132
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07040	AT	Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein \| chr3:2226244-2229024 REVERSE LENGTH=926	SoyBase	E_val: 4.00E-85	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR11017	Panther	LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR11017:SF129	Panther		JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_G7J1I4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-containing resistance-like protein n=1 Tax=Medicago truncatula RepID=G7J1I4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KY93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY93_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g317400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42930

Limit To All Plant Sequences

>Glyma08g42930.1   sequence type=CDS   gene model=Glyma08g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGTTGTCGTGTTTGATGACGTGTGGAATGAAAGTTTTTGGGAGGAAATGAAATTTGCTTTAGTTGATGTTGAAAATGGAAGTAGGATAATAATCACAACCAGGCACCGTGAGGTTGCAGAGTCTTGTAGGACATCTTCTCTTGTTCAAGTGCATGAGTTGCAACCTTTAACTGATGACAAATCTTTCGAATTGTTTTGTAAAACAGCATTTAGATCTGAATTAGATGGGCATTGTCCACACAATCTTAAGGGCATATCAACTGAAATTGTTAAAAAGTGTGAAGGTTTACCACTAGCTATTGTGGCCACCGGTGGCCTTTTATCTCGCAAAAGTAGAAATGCCCGTGAATGGCAAAGATTTAGTGAGAATCTAAGTTCAGAATTAGGAAAGCATCCCAAATTAACTCCCGTGACAAAGATTTTGGGTTTAAGTTATTATGATTTGCCTTACCATCTCAAACCATGCTTCTTGTATTTCGGAATATATCCGGAAGATTATGAAGTTGAGTGTAAGGGATTGATTCTACAATGGGTAGCTGCGGGGTTTGTCAAATCTGATGAAGCGGCACAGACTTTAGAAGAAGTGGCAGAAAAATATTTGAATGAGTTGATCCAAAGAAGTTTGGTTCAAGTATCTTCATTTACATGGTCTGGCAAAATTAAAAGGTGTCGTGTTCATGACGTAGTACGTGAAATGATCCGCGAGAAGAATCAAGATTTAAGCTTTTGCCATTCTGCTAGTGAGCGTGGGAACTTGTCCAAAAGTGGGATGATTCGTCACCTAACAATAGCATCTGGTTCCAACAATTTGACGGGAAGTGTTGAAAGCTCGAACATTCGATCACTTCATGTTTTCGGTGATGAAGAATTGTCCGAATCCTTGGTGAAGAGTATGCCTACAAAGTACAGGTTATTAAGGGTACTTCAATTTGAAGATGCTCGTAGGTTTTATGTTCCGGGCATTGTTGAATGTTTGGGGGACTTATCATTTTTGAGGTACTTAAGCTTCAGAAATTCAACCATAGACCATCTTCCAAAATTAATTGGTGAGCTGCACAGCCTAGAAACATTGGATCTAAGACAAACTTATGAGTGTATGATGCCAAGAGAGATCTACAAGCTTAAGAAGTTAAGACACCTTCTGAGTGGTGATAGTGGGTTTCAAATGGATAGTGGCATTGGAGATCTAACATCCCTACAAACACTCCGTAAAGTGGACATAAGCTATAATACAGAAGAAGTACTAAAAGGGTTGGAAAAACTTACACAATTAAGGGAGTTGGGCTTGAGAGAAGTTGAGCCAAGATGCAAAACTTTTCTGTGCCCCTTGATAAACAAGATGCAACACCTGGAGAAGTTATATATTGCTATAAGACATGATAGTATCATGGATTTGCATTTTGATGTATTTGCACCTGTACTTCAGAAGCTTCATCTTGTGGGGAGGTTAAACGAGTTCCCAAACTGGGTTGGCAAGCTCCAAAATCTTGTTGCGTTGTCCTTGTCATTCACCCAGTTGACACCTGATCCATTGCCACTACTTAAAGATCTACCAAATCTGACGCACCTTAAAATCGATGTTGCATACAAGGGTGATGTTTTGCAGTTTGCAAACAGGGGGTTTCCGAACCTAAAGCAAATACTACTGTTAGATTTGTTTGAATTGAAATCCATCGTTATTGAAGATGGAGCATTGCCTTCTCTCGAAAAGCTCGTATTAAAGCGTATTGACGAACTGACAGAGGTGCCTCGTGGTATTGACAAGTTACCAAAGCTTAAGGTTTTCCATTGTTTTGGGATGTCAGATGAATTTAAAGAAAACTTTAATCTCAACAGAGGACAACGTAGTCAATGGATAATAAAAGGACCGTGGGAATGA

Predicted protein sequences of Glyma08g42930

Limit To All Plant Sequences

>Glyma08g42930.1   sequence type=predicted peptide   gene model=Glyma08g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVVVFDDVWNESFWEEMKFALVDVENGSRIIITTRHREVAESCRTSSLVQVHELQPLTDDKSFELFCKTAFRSELDGHCPHNLKGISTEIVKKCEGLPLAIVATGGLLSRKSRNAREWQRFSENLSSELGKHPKLTPVTKILGLSYYDLPYHLKPCFLYFGIYPEDYEVECKGLILQWVAAGFVKSDEAAQTLEEVAEKYLNELIQRSLVQVSSFTWSGKIKRCRVHDVVREMIREKNQDLSFCHSASERGNLSKSGMIRHLTIASGSNNLTGSVESSNIRSLHVFGDEELSESLVKSMPTKYRLLRVLQFEDARRFYVPGIVECLGDLSFLRYLSFRNSTIDHLPKLIGELHSLETLDLRQTYECMMPREIYKLKKLRHLLSGDSGFQMDSGIGDLTSLQTLRKVDISYNTEEVLKGLEKLTQLRELGLREVEPRCKTFLCPLINKMQHLEKLYIAIRHDSIMDLHFDVFAPVLQKLHLVGRLNEFPNWVGKLQNLVALSLSFTQLTPDPLPLLKDLPNLTHLKIDVAYKGDVLQFANRGFPNLKQILLLDLFELKSIVIEDGALPSLEKLVLKRIDELTEVPRGIDKLPKLKVFHCFGMSDEFKENFNLNRGQRSQWIIKGPWE*

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