Glyma08g42920 - SoyBase

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Report for Sequence Feature Glyma08g42920

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42864153
stop:	42865956
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32460	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 101 \| chr2:13782419-13784363 REVERSE LENGTH=490	SoyBase	E_val: 1.00E-60	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009789	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7IY34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7IY34_MEDTR	SoyBase	E_val: 6.00E-130	ISS
UniRef100_I1N0N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0N4_SOYBN	SoyBase	E_val: 4.00E-176	ISS

Expression Patterns of Glyma08g42920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g317300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42920

Limit To All Plant Sequences

>Glyma08g42920.2   sequence type=CDS   gene model=Glyma08g42920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTATGGCAAACATTAGTGATGATGCAAGCAATGGTGAAAATGGATTCCTGGCAATGTTTGGTGGTGATGAAAGCGGTGGTGGTGGCAGTGGCGGTGTCGGTAGCAGTGGTGATCAGGGTGGTGGTAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGTTATCCTCATGGATTATGTGACAAAAAATGGTGAAGGGAATTGGAATGCAGTTCAGAGGAACACAGGGTTGAATAGATGTGGCAAGAGTTGTAGGCATAGATGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCACCTGAGGAAGAGAAGCTCATTGTTGATCTTCATGCACAGTTTGGGAACAAATGGGCCAGAATGGCTGCTTTGTTGCCTGGGAGAACAGACAATGAAATCAAGAACTATTGGAACACAAGGATCAAACGCCGCCAAAGGCAGGGATCAAACCCCAACATTGCCACAAGTTTTGAGTTGTTCAATCAAAACCAACAACATCATCAACAACAACAATACCAATACCAACAACAACAATACCAACAACACCCTCTGTCTCCAACTGCATCTCATCATTCCCTTCTTAGTTCCCCTCTCCAACACAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCATCCTCTTCACCTTCCCCTCTCTCCTTCACCTTCCAAAGACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTATTGCGCCTCTCCAAGCTACAACAACAACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTAAGGTTCCCTGTTTCTTCAGGCTTCTCTCAGTTTTTTCAGCCCTCTTTGTTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTTAAGCCAGTACTATAAACCACCCGAAGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTGATGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCGGGCAAGAACTCAAAGAAACGAGGCTACTTGAGTTTGAATGAGGGAAATAATGTGTTTAATGCATGCTGA

Predicted protein sequences of Glyma08g42920

Limit To All Plant Sequences

>Glyma08g42920.2   sequence type=predicted peptide   gene model=Glyma08g42920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGMANISDDASNGENGFLAMFGGDESGGGGSGGVGSSGDQGGGNVEDVALKKGPWTTAEDVILMDYVTKNGEGNWNAVQRNTGLNRCGKSCRHRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGSNPNIATSFELFNQNQQHHQQQQYQYQQQQYQQHPLSPTASHHSLLSSPLQHRQPFTSSSPHNFLDHSPLPLSSSSSPSPLSFTFQRPAPMLSTPLRFKRYCASPSYNNNLSDPPLTTQFPHLDGLRFPVSSGFSQFFQPSLLDSDRGVSSSSSSLAFQPKLELPLSQYYKPPEEQDIKLDIEFNDPSFQSSSSGLMGDLLFEAQAMASGKNSKKRGYLSLNEGNNVFNAC*

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