SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15700 | AT | Annotation by Michelle Graham. TAIR10: ATPase, F1 complex, gamma subunit protein | chr1:5402629-5403789 REVERSE LENGTH=386 | SoyBase | E_val: 2.00E-143 | ISS |
| GO:0015986 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport | SoyBase | N/A | ISS |
| GO:2000067 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of root morphogenesis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009544 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast ATP synthase complex | SoyBase | N/A | ISS |
| GO:0045261 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting ATP synthase complex, catalytic core F(1) | SoyBase | N/A | ISS |
| GO:0030234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity | SoyBase | N/A | ISS |
| GO:0046933 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism | SoyBase | N/A | ISS |
| GO:0046961 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism | SoyBase | N/A | ISS |
| KOG1531 | KOG | F0F1-type ATP synthase, gamma subunit | JGI | ISS | |
| PTHR11693 | Panther | ATP SYNTHASE GAMMA CHAIN | JGI | ISS | |
| PTHR11693:SF9 | Panther | ATP SYNTHASE GAMMA-RELATED | JGI | ISS | |
| PF00231 | PFAM | ATP synthase | JGI | ISS | |
| UniRef100_I1KY89 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase gamma chain n=1 Tax=Glycine max RepID=I1KY89_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KY89 | UniRef | Annotation by Michelle Graham. Best UniRef hit: ATP synthase gamma chain n=1 Tax=Glycine max RepID=I1KY89_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g42900 not represented in the dataset |
Glyma08g42900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g317100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g42900.1 sequence type=CDS gene model=Glyma08g42900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTCCCTCTCAAAACCCATCCTTTCTCCGGTTCGCCCCACCCTCCCTCCGGTTCGCTGCGGGTCCCGCGAGCTCCGCGAGCGAATCAAGACCGTCCAAACCACTCAAAAGATCACCGAAGCCATGAAACTCATCTCCGCCGCGCGCGTCCGCCGCGCCCAGGAGGCCGTCGTCAGTGGCCGCCCCTTCTCCTCAAACCTCGCCGCAATGCTAAACGACATCACCCAGCGCCTCCAAAACGACGACGTCTCCACCCCTCTCACCCACGCCAGACCCGTCAGAACCGTTGCACTCGTCGTCGTCACCGCGGACCGCGGCCTCTGCGGCGGCTTCAACAAATCGGTTATCCGAAAAGCCCTCGTACGAATCGAGGAACTGGAAAAACTCAACTTGGGGTGCGTTGTGATCAGCGTTGGCAAAAAGGGTAACTCGTTTTTCACTCACAGTATAAATAAGAAACACCCTTTTGTGAAAGTTGATAGCTTTATCGAAATTGGTGGGTTTCCTACCGCAAAGGAGGCTCAGGTTATCGCCGATGATGTTTTTTCACTGTTTGTTAGTGAGGAGGTTGATAAGGTTGAGCTTGTGTACGCTAAGTTTGTTTCATTGGTTAGGTTTGAGCCTGTGATTCAGAATTTGTTGCCTTTGGGAGAGGTTTGTGATGTGAAAGATGAGATTTTTAGGTTGAGTAGTAAAGAGGGTAAGTTAGCTGTGGAGAGGGATGTTGTGAAGTTGAAAAAAGAGGGTGAGATGTGTTTTCCTCTCATGGAGTTTGAGCAGGATCCTGTTATGATTCTTGATGCCATGTTGCCTCTTTATTTGAATAGTCAGGTTTTGAGGGGTTTGCAGGAGTCTATGGCCAGTGAGCTTGCTGCTAGGATGGTGGCCATGTCAAATGCCACGGATAACGCAGTTGATTTGAGCAAGAGGCTTTCGGTTGAGTACAATCGGGAACGGCAGGCAAAGATCACCGGGGAGTTGTTGGAGATTGTGGCTGGAGCTGAGGCATTAGCAGAAAATGACTGA
>Glyma08g42900.1 sequence type=predicted peptide gene model=Glyma08g42900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSLSKPILSPVRPTLPPVRCGSRELRERIKTVQTTQKITEAMKLISAARVRRAQEAVVSGRPFSSNLAAMLNDITQRLQNDDVSTPLTHARPVRTVALVVVTADRGLCGGFNKSVIRKALVRIEELEKLNLGCVVISVGKKGNSFFTHSINKKHPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVSEEVDKVELVYAKFVSLVRFEPVIQNLLPLGEVCDVKDEIFRLSSKEGKLAVERDVVKLKKEGEMCFPLMEFEQDPVMILDAMLPLYLNSQVLRGLQESMASELAARMVAMSNATDNAVDLSKRLSVEYNRERQAKITGELLEIVAGAEALAEND*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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