Glyma08g42880 - SoyBase

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Report for Sequence Feature Glyma08g42880

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42835430
stop:	42839555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28490	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 61 \| chr1:10016433-10017842 FORWARD LENGTH=245	SoyBase	E_val: 6.00E-121	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0030140	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network transport vesicle	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3202	KOG	SNARE protein TLG1/Syntaxin 6	JGI		ISS
PTHR12380	Panther	SYNTAXIN	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
PF09177	PFAM	Syntaxin 6, N-terminal	JGI		ISS
UniRef100_C6TJZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJZ6_SOYBN	SoyBase	E_val: 4.00E-180	ISS
UniRef100_G7K3H9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-61 n=1 Tax=Medicago truncatula RepID=G7K3H9_MEDTR	SoyBase	E_val: 7.00E-131	ISS

Expression Patterns of Glyma08g42880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42880

Paralog	Evidence	Comments
Glyma18g10990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g316900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42880

Limit To All Plant Sequences

>Glyma08g42880.2   sequence type=transcript   gene model=Glyma08g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGTATTTTATTTATAAAATTAATTTGTGTTCTTAGCATGAAGAACTAATAAGTTGAATAATCAAAGGCAAAAGGAAGAAGCAAAACCAAACGCAGTGCGTGTGTTCTTCTCTGAAGTCTGAACCATTCGTTCCTCTCTCATAACATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGCAAGTCTGGAGCTGCGGAACAAGGACATCTTACAAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTAGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGGATTGATGAAGCTGAGGTTGAAAGCCGAAGGAGATGGGCAAGCAGTGCTCGTTCTCAGGTTGGCACAATGAAGAAAGCAATGGAATCTGGCAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGAGAACTGATGAGGCTACCAAATTCTCATCAAACTGATAGCTCCAACCAGTATGCTGCCAGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGACGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTCAGTGAAAGTGTACGAAGAATCGGAGGTGTTGGACTCACAATACATGATGAACTCACTGCACAGGAAAAGATTCTAGATGAGCTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAGTAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTCCTCTTTATCTTAGTATTCTTCACCTAGTCATTGAGATGGGACCAGTCTCTCTGCTGTTTGTACATGAAAAGAGATCTCATTTTTTTTTGTTGAGATTCAAGATTAATAATAGACATGCATTTAACTATTCAGTTAAATGTAAGTCATTTTGTGCTATGTATGTTTCTGGAAGGTTGTAGAAAGTTCTGATTGTGATGAAAATGGGAAGCAAATAGTTAAGGATTTATAGTAGGATTTTGATTCTTGACACGGTTGATTACGTGAATGATGCTAGTGATATTCGTTGCTTAAACCATTTTTCTGCTGCATGTATTGTTTATTTATTGTTTGTCATTGCTTTGCAATTGTAAATATAGGGACACAAGATAGTCTTGCAGTGGAATTTATTAAGTAGATTTTAAAATAGTAAAATATATCTATTTGATTTCTGAAAAGC

Coding sequences of Glyma08g42880

Limit To All Plant Sequences

>Glyma08g42880.1   sequence type=CDS   gene model=Glyma08g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGCAAGTCTGGAGCTGCGGAACAAGGACATCTTACAAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTAGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGGATTGATGAAGCTGAGGTTGAAAGCCGAAGGAGATGGGCAAGCAGTGCTCGTTCTCAGGTTGGCACAATGAAGAAAGCAATGGAATCTGGCAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGAGAACTGATGAGGCTACCAAATTCTCATCAAACTGATAGCTCCAACCAGTATGCTGCCAGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGACGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTCAGTGAAAGTGTACGAAGAATCGGAGGTGTTGGACTCACAATACATGATGAACTCACTGCACAGGAAAAGATTCTAGATGAGCTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTCCTCTTTATCTTAGTATTCTTCACCTAG

>Glyma08g42880.2   sequence type=CDS   gene model=Glyma08g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGCAAGTCTGGAGCTGCGGAACAAGGACATCTTACAAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTAGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGGATTGATGAAGCTGAGGTTGAAAGCCGAAGGAGATGGGCAAGCAGTGCTCGTTCTCAGGTTGGCACAATGAAGAAAGCAATGGAATCTGGCAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGAGAACTGATGAGGCTACCAAATTCTCATCAAACTGATAGCTCCAACCAGTATGCTGCCAGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGACGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTCAGTGAAAGTGTACGAAGAATCGGAGGTGTTGGACTCACAATACATGATGAACTCACTGCACAGGAAAAGATTCTAGATGAGCTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAGTAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAG

Predicted protein sequences of Glyma08g42880

Limit To All Plant Sequences

>Glyma08g42880.1   sequence type=predicted peptide   gene model=Glyma08g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSAQDPFYVVKAEIQDSIDKLQSTFHQWESKSGAAEQGHLTKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEAEVESRRRWASSARSQVGTMKKAMESGKGSSTTSHASVNGMRRELMRLPNSHQTDSSNQYAARDNDDFIQSESDRQTLLIKRQDEELDELSESVRRIGGVGLTIHDELTAQEKILDELGSEMDSTTNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT*

>Glyma08g42880.2   sequence type=predicted peptide   gene model=Glyma08g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSAQDPFYVVKAEIQDSIDKLQSTFHQWESKSGAAEQGHLTKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEAEVESRRRWASSARSQVGTMKKAMESGKGSSTTSHASVNGMRRELMRLPNSHQTDSSNQYAARDNDDFIQSESDRQTLLIKRQDEELDELSESVRRIGGVGLTIHDELTAQEKILDELGSEMDSTTNRLDFVQVKKSGNGYEEG*

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