SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g42850

Feature Type:gene_model
Chromosome:Gm08
Start:42814225
stop:42819950
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g42850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20410AT Annotation by Michelle Graham. TAIR10: calmodulin-domain protein kinase 9 | chr3:7116388-7118824 FORWARD LENGTH=541 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004683GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0032 KOG Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily JGI ISS
PTHR24347Panther FAMILY NOT NAMED JGI ISS
PTHR24347:SF13Panther CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE I JGI ISS
PF00036PFAM EF hand JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_I1KY83UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY83_SOYBN SoyBaseE_val: 0ISS
UniRef100_O24431UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like domain protein kinase isoenzyme gamma n=1 Tax=Glycine max RepID=O24431_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g42850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42850
ParalogEvidenceComments
Glyma18g11030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g316500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g42850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g42850
>Glyma08g42850.1   sequence type=CDS   gene model=Glyma08g42850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTTGTGCAAGTAAAGAGTCAGAGCCGCAACACAATGGTTACAGACATGCTGGGACTGGTGGTGTGCACAACCAGAAGACTCATGAACCTTTGGTCAACCAATCAAGAGCACCTGCAAATCAACCTTATCATTTACATGAAAAGCATGCTGCATCCACTGCTCAGACAGTGCCTCAAAATATGCCATGGAAGCCTCCTGGTCCAGCCCTTAGTCCTAAACCTGTTGTTGGTGTTAGGCAAGACACAATTCTTGGGAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTTGGGAAGGAGTTGGGTAGAGGGCAATTTGGTGTGACATATCTTTGCACTGAGAATTCGACCGGATTGCAGTATGCCTGCAAGTCCATTTCCAAGAGGAAACTTGCGAGCAAATCTGATAAGGAGGACATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGAGCTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGGGAACTTTTTGATAGGATTATTGCCAAGGGGCATTACAGTGAGAAGGCTGCTGCTTCAATTTGCAGACAAATTGTAAATGTTGTTCATATCTGTCATTTCATGGGTGTGATGCATAGGGATCTGAAACCAGAGAATTTTTTGCTATCTAGTAGGGACGAAAATGCACTTCTCAAGGCAACCGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATCTCAGACAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACCTCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTTCAGACAAGCCGATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAGCTAAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTTAAGTCAGGATTGCATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAGAGATGACCAACTTTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAATTGGAATCAGCCATGAAAGAATATGGTATGGGTGATGATGCAACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGGAACCAACAACAAGGCAAGCTATTCTAA
Predicted protein sequences of Glyma08g42850
>Glyma08g42850.1   sequence type=predicted peptide   gene model=Glyma08g42850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCCASKESEPQHNGYRHAGTGGVHNQKTHEPLVNQSRAPANQPYHLHEKHAASTAQTVPQNMPWKPPGPALSPKPVVGVRQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLASKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRSSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPNISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKSGLHRLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGFITRDELESAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQQGKLF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo