Glyma08g42820 - SoyBase

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Report for Sequence Feature Glyma08g42820

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42785107
stop:	42791663
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20390	AT	Annotation by Michelle Graham. TAIR10: endoribonuclease L-PSP family protein \| chr3:7110227-7111695 REVERSE LENGTH=187	SoyBase	E_val: 4.00E-79	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004521	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity	SoyBase	N/A	ISS
KOG2317	KOG	Putative translation initiation inhibitor UK114/IBM1	JGI		ISS
PTHR11803	Panther	TRANSLATION INITIATION INHIBITOR	JGI		ISS
PF01042	PFAM	Endoribonuclease L-PSP	JGI		ISS
UniRef100_B4UWE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Perchloric acid soluble translation inhibitor protein n=1 Tax=Arachis hypogaea RepID=B4UWE2_ARAHY	SoyBase	E_val: 3.00E-104	ISS
UniRef100_I1KY80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KY80_SOYBN	SoyBase	E_val: 3.00E-132	ISS

Expression Patterns of Glyma08g42820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g316200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42820

Limit To All Plant Sequences

>Glyma08g42820.2   sequence type=transcript   gene model=Glyma08g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGAGAATGGCAAGGGTAGTTTCGGAAAACCGATATCTCACCAATGTTACGAGGCAGAGCACAATGAGTCACAGACAGTGTTTGGGAATTTTTTATAATGTCACAGACAGTGAGTCACTGACAGTGTTTGTGTGTGTCTAAGAGAGAGAGAGATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGAGCACCATTCTAATAGTATATATGAGTCTTCAACAAACTCAGGTAAATAATACGGGAGGGACATATCCAACCAAATTGGATTGTTTGTATCTTGTTGGATGATGATGCTCATGTCCTTACAAAGCGAACCCACTGGAAAGGACTCCAATTCCCATATTCTCTCATAAGATTTTGTTTCCATTAAATCTGAAAGAAATTATGAGAAAGGTTTGCAGCTTTTTGTAATGCCGTTTCACTTTATCATGGACCATGTTTGGATGTCAACTCTCCAATAAAACCATTTCTACTACATGTTTCAATGTAAATTCTCTTGCTCACTGCATAAATATTTTCCTTCCACAACTAGATTGAAGAGAGATAAAAAGAGACTAAAAAGGA

Coding sequences of Glyma08g42820

Limit To All Plant Sequences

>Glyma08g42820.1   sequence type=CDS   gene model=Glyma08g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGA

>Glyma08g42820.2   sequence type=CDS   gene model=Glyma08g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGA

Predicted protein sequences of Glyma08g42820

Limit To All Plant Sequences

>Glyma08g42820.1   sequence type=predicted peptide   gene model=Glyma08g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFCAARTFNIPAMNAGVLRRRASWAAGIVGASVAGAALLRSCSSKRSAPFACMSLSTDTSLKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLIPETGKFISDNVEDQTEQVLKNMGEILKSGGASYSSVVKTTILLADLKDFKKVNEIYAKYFPSPPPARSTYQVAGLPMDAKIEIECIAAL*

>Glyma08g42820.2   sequence type=predicted peptide   gene model=Glyma08g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFCAARTFNIPAMNAGVLRRRASWAAGIVGASVAGAALLRSCSSKRSAPFACMSLSTDTSLKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLIPETGKFISDNVEDQTEQVLKNMGEILKSGGASYSSVVKTTILLADLKDFKKVNEIYAKYFPSPPPARSTYQVAGLPMDAKIEIECIAAL*

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