Glyma08g42771 - SoyBase

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Report for Sequence Feature Glyma08g42771

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42736266
stop:	42741338
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42771

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50660	AT	Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). \| chr1:18771386-18774385 FORWARD LENGTH=725	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
UniRef100_Q9LPT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F11F12.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPT5_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338AFE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338AFE related cluster n=1 Tax=unknown RepID=UPI0002338AFE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42771

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g42771 not represented in the dataset	Glyma08g42771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42771

Paralog	Evidence	Comments
Glyma18g11135	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42771 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g315800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42771

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42771

Limit To All Plant Sequences

>Glyma08g42771.1   sequence type=CDS   gene model=Glyma08g42771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCTCCGGCGACTCCACCCGCCCGCTGCGCCCATTCCCGCCGGCCATTGCAGCCCCCTCTCCGGACTCCGATCTCCAACCGCACCGGAGGGCCAGCCGCCGCCATCCCCGAACTCCGGCCAGCCGCCTTAGGCTGGCCGGTGGACACACCGGAAAACGGAGCAGGCCGGAAACCCCCTTGTCCAAGTGGAAGATCCACGACGGCGGAAGAGAGAGGAACATCATTGGCGGCGGCGGCGGCGGCGATCCGCTCGAGGACCACGTCCGGAAGAAGGAGGCTCCGCCGCATGCCGCCGTGTCGGCGAGGAAGCTCGCAGCCGGGATATGGCGGATGCAGCTGCCGGAAGCAGCGGCGGGTGATGGCGGAAGGCGAAGGGTTTCGAGGAAAATCGGTGAAGATCGTTTGGGAGTTCAGCATGGAATTGGCCATGTAGACCACCAATTTCTCAGCCATCAAAGTGGCATGATGCATGGTTCTGCTATGAAGAATCCATCACGAAGTCCCCATTCCATTTCTGGGACTAAGGATGGACACTTTTGTGAGCTCAAGCCTTCTTTCCAGTCTTCGAGTACCGCAATGGAGGGGGCAACAAAGTGGGATCCTGTTTGTTTAAAAACATCAGACGAGGAGCATCACATCTACAGCCAAATGAAACTTCTCGACCAAAAGGTTAGCACTGTTTCTTCTGTATCAGCTCTTGAAGCTGAACTAGAGCAGGCTCGTGTGCAGATCCAGGAACTTGAGACTGAATGCCACTCCTCCAAAAAGAAACTTGAACATTTCTTGAAGAAAGTTAGTGAGGAAAGGGCCTCATGGCGAAGCAAAGAGCATGAAAAAATTCGCGCTTACGTTGATGACATTAAATCAGAGTTGAATCGTGAAAGGAAAAGTCGCCAGAGGATTGAAATTGTCAATTCCAGGTTGGTTAATGAGTTGGCAGATGCCAAGTTAATAACAAAACGATACATGCAAGATTATGAGAAGGAAAGGAAGGCCAGAGAATTGATTGAAGAAATTTGTGATGAGCTTGCTAAGGAAATTGGAGAAGACAAGGCTGAAATTGAAGCATTGAAGAGGGAATCTATGAAACTTAGGGAAGAAGTGGAAGAGGAGAGGAGGATGTTACAAATGGCTGAAGTATGGCGTGAAGAACGTGTTCATATGAAATTGATTGATGCAAAAGTTGCTCTTGATGAGAAGTACTCACAGATGAATAAACTTGTAGCGGATTTGGAAACCTTTCTCAAATCAATAAATGTGAACCCAAATTCAAAGGAGATGAAAGAGGCAAGGTCACTTCAACAGGCTGCAGCTGTTGTAGACATTCAAGACATCAAGGGATTTTCGTATGAGCCAGCTAATCCAGATGATATTTTTGCCATTTTCGAAGATTTAAATTTTGGCGAATCCAATGAGAGGGAGATTGAAGCATGTGTTGCTTACTCTCCAGTGAGTCATGCCTCAAAGATTCACACAGTGAGTCCTGAAGCCAAATTGATTAGTAAGGATAACTTGCAAAGATGTTCTGATGTATTTATGGATGACAATGGTGATATAGAAGAAGATGAAAGTGGATGGGAAACTGTGAGCCATGTTGAGGATCAGGGATCAAGTTGTTCGCCTGAAGGGAGTGCCCTATTGGTGAACAAGAATCGTCGAGAGAGTGATGTTTCAGGGAGGAGTGTGCTTGAATGGGAAGAAAATGCAGGTTTAGAGACTCCAATAACTGAAATTAGTGAAGTCTGTTCAGTACCAGCTAAGCAATCAAAGAAGGTATCCTCCATAGCAAGGCTTTGGAGGTCTGGCCCAAACAGTGGGGATAATTACAAGATAATCTCTGTGGAGGGAATGAATGGAAGGGTATCTAGTGGGGGCATAATGTCCCCTGATTGGGGACTGGGTAATGGTGGACTAAGCCCCCAAGACCTTCTGTACCAGTTGAGTTCGCCTGAGTCAGCAAATCTGCATAATCGAGGCATGAAAGGGTGCATTCCTCGCACCGTGCAGAAGAGTAGTCTGAAAGCCAGACTTTTGGAGGCTAGGATGGAAAGCCAGAAGGTTCAGTTGCGCCATGTTCTTAAACAGAAGATTTAG

Predicted protein sequences of Glyma08g42771

Limit To All Plant Sequences

>Glyma08g42771.1   sequence type=predicted peptide   gene model=Glyma08g42771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKISGDSTRPLRPFPPAIAAPSPDSDLQPHRRASRRHPRTPASRLRLAGGHTGKRSRPETPLSKWKIHDGGRERNIIGGGGGGDPLEDHVRKKEAPPHAAVSARKLAAGIWRMQLPEAAAGDGGRRRVSRKIGEDRLGVQHGIGHVDHQFLSHQSGMMHGSAMKNPSRSPHSISGTKDGHFCELKPSFQSSSTAMEGATKWDPVCLKTSDEEHHIYSQMKLLDQKVSTVSSVSALEAELEQARVQIQELETECHSSKKKLEHFLKKVSEERASWRSKEHEKIRAYVDDIKSELNRERKSRQRIEIVNSRLVNELADAKLITKRYMQDYEKERKARELIEEICDELAKEIGEDKAEIEALKRESMKLREEVEEERRMLQMAEVWREERVHMKLIDAKVALDEKYSQMNKLVADLETFLKSINVNPNSKEMKEARSLQQAAAVVDIQDIKGFSYEPANPDDIFAIFEDLNFGESNEREIEACVAYSPVSHASKIHTVSPEAKLISKDNLQRCSDVFMDDNGDIEEDESGWETVSHVEDQGSSCSPEGSALLVNKNRRESDVSGRSVLEWEENAGLETPITEISEVCSVPAKQSKKVSSIARLWRSGPNSGDNYKIISVEGMNGRVSSGGIMSPDWGLGNGGLSPQDLLYQLSSPESANLHNRGMKGCIPRTVQKSSLKARLLEARMESQKVQLRHVLKQKI*

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